Wall clock time and date at job start Thu Apr 9 2020 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 H 1.09006 * 109.46750 * 177.23019 * 3 2 1 5 5 N 1.46908 * 109.47037 * 57.23537 * 3 2 1 6 6 C 1.46899 * 110.99744 * 85.65068 * 5 3 2 7 7 C 1.53000 * 109.46630 * 175.64394 * 6 5 3 8 8 C 1.50703 * 109.47269 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99588 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99893 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99640 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47081 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46997 * 119.99471 * 12 10 8 15 15 H 1.48492 * 109.47113 * 239.99727 * 12 10 8 16 16 C 1.52998 * 109.47138 * 297.23192 * 3 2 1 17 17 C 1.54255 * 110.03490 * 297.16594 * 16 3 2 18 18 C 1.54889 * 104.19888 * 217.10935 * 17 16 3 19 19 C 1.54885 * 102.74908 * 37.94087 * 18 17 16 20 20 C 1.53882 * 110.02945 * 180.02562 * 16 3 2 21 21 H 1.08999 * 109.47161 * 177.43537 * 1 2 3 22 22 H 1.08994 * 109.47303 * 57.43552 * 1 2 3 23 23 H 1.08999 * 109.47088 * 297.42972 * 1 2 3 24 24 H 1.09003 * 109.47126 * 120.00080 * 2 1 3 25 25 H 1.09002 * 109.47016 * 240.00441 * 2 1 3 26 26 H 1.00896 * 110.99481 * 209.60794 * 5 3 2 27 27 H 1.08995 * 109.47219 * 295.64094 * 6 5 3 28 28 H 1.08999 * 109.47280 * 55.64771 * 6 5 3 29 29 H 1.09007 * 109.47640 * 300.00130 * 7 6 5 30 30 H 1.09000 * 109.47720 * 60.00124 * 7 6 5 31 31 H 0.97004 * 120.00027 * 179.97438 * 11 10 8 32 32 H 1.09002 * 110.01665 * 58.61620 * 16 3 2 33 33 H 1.09008 * 110.48503 * 335.78710 * 17 16 3 34 34 H 1.09000 * 110.48928 * 98.42889 * 17 16 3 35 35 H 1.09005 * 110.75193 * 279.62407 * 18 17 16 36 36 H 1.08998 * 110.91642 * 156.33200 * 18 17 16 37 37 H 1.09001 * 110.48711 * 203.38126 * 19 18 17 38 38 H 1.09002 * 110.59878 * 80.79427 * 19 18 17 39 39 H 1.08997 * 110.02820 * 238.57382 * 20 16 3 40 40 H 1.09000 * 110.03092 * 0.02562 * 20 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 0.0497 5 7 1.4965 2.1540 1.1647 6 6 2.3356 1.9395 2.3513 7 6 1.8010 2.7801 3.5125 8 6 2.6620 2.5605 4.7297 9 1 3.5059 1.8884 4.6800 10 6 2.3718 3.2170 5.9069 11 7 1.3440 4.0351 5.9675 12 14 3.4388 2.9443 7.4158 13 1 4.5230 1.9839 7.0884 14 1 4.0336 4.2367 7.8416 15 1 2.6076 2.3953 8.5171 16 6 1.5877 2.1433 -1.2826 17 6 2.2092 1.4488 -2.5117 18 6 2.5255 2.6111 -3.4854 19 6 3.0057 3.7340 -2.5328 20 6 2.0946 3.5962 -1.2962 21 1 -0.3633 -1.0266 -0.0460 22 1 -0.3633 0.5531 -0.8660 23 1 -0.3633 0.4734 0.9121 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.3904 3.1383 0.9699 27 1 2.3137 0.8849 2.6259 28 1 3.3607 2.2362 2.1298 29 1 1.8227 3.8348 3.2380 30 1 0.7757 2.4835 3.7341 31 1 1.1396 4.4967 6.7958 32 1 0.5001 2.1264 -1.3534 33 1 3.1238 0.9256 -2.2323 34 1 1.4957 0.7581 -2.9611 35 1 1.6290 2.9185 -4.0240 36 1 3.3158 2.3312 -4.1819 37 1 2.8733 4.7110 -2.9974 38 1 4.0491 3.5822 -2.2564 39 1 1.2531 4.2845 -1.3742 40 1 2.6632 3.8017 -0.3893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382773556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:42 Heat of formation + Delta-G solvation = -39.180668 kcal Electronic energy + Delta-G solvation = -16006.742205 eV Core-core repulsion = 13626.618570 eV Total energy + Delta-G solvation = -2380.123635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.12801 -35.80871 -33.50382 -31.99704 -29.58362 -28.56841 -27.89649 -24.82898 -23.74800 -21.27810 -20.49948 -20.20882 -18.75007 -16.37249 -16.06086 -15.65793 -14.79002 -14.43960 -13.87318 -13.55876 -13.31804 -13.21938 -13.02431 -12.35577 -12.16765 -11.48344 -11.32713 -11.11309 -11.08488 -11.02426 -10.99914 -10.84243 -10.64973 -10.60311 -10.48294 -10.32661 -10.00349 -9.79860 -9.28338 -9.09136 -8.33501 -7.69550 -5.97848 -4.00072 3.32334 3.39630 3.43855 4.43993 4.55691 4.62420 4.69391 4.99881 5.21221 5.33301 5.38260 5.44479 5.55020 5.61484 5.66217 5.71069 5.76001 5.77224 5.87817 5.94516 6.06996 6.08849 6.19138 6.23680 6.28396 6.37471 6.44623 6.47331 6.57414 6.59675 6.80163 7.04355 7.58118 7.77839 7.88875 8.04740 8.13331 8.47197 9.07494 9.63697 11.13651 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036881 B = 0.005384 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.023585 B = 5199.121302 C = 5560.340467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.092 3.908 4 H 0.036 0.964 5 N -0.686 5.686 6 C 0.067 3.933 7 C 0.024 3.976 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.094 4.094 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.127 4.127 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.336 0.664 27 H 0.057 0.943 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -3.833 -17.285 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.018 4.018 4 H 0.054 0.946 5 N -0.318 5.318 6 C -0.061 4.061 7 C -0.013 4.013 8 C -0.558 4.558 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.112 4.112 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.165 4.165 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.498 -4.219 -16.987 17.510 hybrid contribution 1.353 0.488 0.778 1.635 sum 1.851 -3.731 -16.209 16.735 Atomic orbital electron populations 1.21644 0.95508 0.99842 1.02751 1.21486 0.96942 0.95743 1.00661 1.21608 0.96142 0.94288 0.89753 0.94579 1.60635 1.52057 1.15576 1.03533 1.22170 0.92820 1.00758 0.90360 1.19087 0.97060 0.94261 0.90927 1.21222 1.12862 1.26065 0.95690 0.92769 1.24998 0.95292 0.95226 0.98837 1.69983 1.27628 1.28843 1.26854 0.86547 0.80513 0.77924 0.83080 1.19786 1.21051 1.20981 1.21985 1.00949 0.94109 0.94202 1.22395 1.00498 0.97291 0.95195 1.22493 1.00576 0.95813 0.97368 1.22333 0.99431 0.98430 0.95925 1.22261 0.99294 0.96651 0.98282 0.94386 0.93469 0.90960 0.92354 0.92839 0.84490 0.92487 0.96928 0.96960 0.95694 0.93084 0.90072 0.91653 0.91836 0.91737 0.92000 0.92023 0.91898 0.91683 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.47 37.16 0.35 -1.57 16 2 C -0.11 -1.54 5.63 -26.73 -0.15 -1.69 16 3 C 0.09 1.36 1.58 -67.71 -0.11 1.26 16 4 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 5 N -0.69 -12.30 5.47 -106.72 -0.58 -12.89 16 6 C 0.07 1.45 5.47 -3.82 -0.02 1.42 16 7 C 0.02 0.64 5.19 -27.88 -0.14 0.49 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 12 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 C -0.09 -1.16 2.37 -89.50 -0.21 -1.37 16 17 C -0.12 -1.22 5.27 -25.08 -0.13 -1.35 16 18 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 19 C -0.12 -1.30 6.83 -25.10 -0.17 -1.47 16 20 C -0.13 -1.55 5.59 -25.64 -0.14 -1.69 16 21 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.59 6.35 -51.93 -0.33 0.26 16 23 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 24 H 0.06 0.89 7.65 -51.93 -0.40 0.50 16 25 H 0.05 0.65 7.19 -51.93 -0.37 0.27 16 26 H 0.34 5.96 6.64 -39.29 -0.26 5.70 16 27 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 28 H 0.01 0.27 7.95 -51.93 -0.41 -0.14 16 29 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.08 1.03 6.41 -51.93 -0.33 0.70 16 33 H 0.06 0.70 7.76 -51.92 -0.40 0.30 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.91 6.85 -51.93 -0.36 0.55 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -29.50 307.55 -8.95 -38.44 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.40 Total: 0.43 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.31 Total: -21.03 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.15 Total: -39.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.50 -8.95 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382773556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.736 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds