Wall clock time and date at job start Thu Apr 9 2020 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 H 1.09006 * 109.46750 * 177.23019 * 3 2 1 5 5 N 1.46908 * 109.47037 * 57.23537 * 3 2 1 6 6 C 1.46899 * 110.99744 * 85.65068 * 5 3 2 7 7 C 1.53000 * 109.46630 * 175.64394 * 6 5 3 8 8 C 1.50703 * 109.47269 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99588 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99893 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99640 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47081 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46997 * 119.99471 * 12 10 8 15 15 H 1.48492 * 109.47113 * 239.99727 * 12 10 8 16 16 C 1.52998 * 109.47138 * 297.23192 * 3 2 1 17 17 C 1.54255 * 110.03490 * 297.16594 * 16 3 2 18 18 C 1.54889 * 104.19888 * 217.10935 * 17 16 3 19 19 C 1.54885 * 102.74908 * 37.94087 * 18 17 16 20 20 C 1.53882 * 110.02945 * 180.02562 * 16 3 2 21 21 H 1.08999 * 109.47161 * 177.43537 * 1 2 3 22 22 H 1.08994 * 109.47303 * 57.43552 * 1 2 3 23 23 H 1.08999 * 109.47088 * 297.42972 * 1 2 3 24 24 H 1.09003 * 109.47126 * 120.00080 * 2 1 3 25 25 H 1.09002 * 109.47016 * 240.00441 * 2 1 3 26 26 H 1.00896 * 110.99481 * 209.60794 * 5 3 2 27 27 H 1.08995 * 109.47219 * 295.64094 * 6 5 3 28 28 H 1.08999 * 109.47280 * 55.64771 * 6 5 3 29 29 H 1.09007 * 109.47640 * 300.00130 * 7 6 5 30 30 H 1.09000 * 109.47720 * 60.00124 * 7 6 5 31 31 H 0.97004 * 120.00027 * 179.97438 * 11 10 8 32 32 H 1.09002 * 110.01665 * 58.61620 * 16 3 2 33 33 H 1.09008 * 110.48503 * 335.78710 * 17 16 3 34 34 H 1.09000 * 110.48928 * 98.42889 * 17 16 3 35 35 H 1.09005 * 110.75193 * 279.62407 * 18 17 16 36 36 H 1.08998 * 110.91642 * 156.33200 * 18 17 16 37 37 H 1.09001 * 110.48711 * 203.38126 * 19 18 17 38 38 H 1.09002 * 110.59878 * 80.79427 * 19 18 17 39 39 H 1.08997 * 110.02820 * 238.57382 * 20 16 3 40 40 H 1.09000 * 110.03092 * 0.02562 * 20 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 0.0497 5 7 1.4965 2.1540 1.1647 6 6 2.3356 1.9395 2.3513 7 6 1.8010 2.7801 3.5125 8 6 2.6620 2.5605 4.7297 9 1 3.5059 1.8884 4.6800 10 6 2.3718 3.2170 5.9069 11 7 1.3440 4.0351 5.9675 12 14 3.4388 2.9443 7.4158 13 1 4.5230 1.9839 7.0884 14 1 4.0336 4.2367 7.8416 15 1 2.6076 2.3953 8.5171 16 6 1.5877 2.1433 -1.2826 17 6 2.2092 1.4488 -2.5117 18 6 2.5255 2.6111 -3.4854 19 6 3.0057 3.7340 -2.5328 20 6 2.0946 3.5962 -1.2962 21 1 -0.3633 -1.0266 -0.0460 22 1 -0.3633 0.5531 -0.8660 23 1 -0.3633 0.4734 0.9121 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.3904 3.1383 0.9699 27 1 2.3137 0.8849 2.6259 28 1 3.3607 2.2362 2.1298 29 1 1.8227 3.8348 3.2380 30 1 0.7757 2.4835 3.7341 31 1 1.1396 4.4967 6.7958 32 1 0.5001 2.1264 -1.3534 33 1 3.1238 0.9256 -2.2323 34 1 1.4957 0.7581 -2.9611 35 1 1.6290 2.9185 -4.0240 36 1 3.3158 2.3312 -4.1819 37 1 2.8733 4.7110 -2.9974 38 1 4.0491 3.5822 -2.2564 39 1 1.2531 4.2845 -1.3742 40 1 2.6632 3.8017 -0.3893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382773556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:42 Heat of formation + Delta-G solvation = -55.834320 kcal Electronic energy + Delta-G solvation = -16007.464362 eV Core-core repulsion = 13626.618570 eV Total energy + Delta-G solvation = -2380.845791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -40.20941 -37.13494 -35.36580 -33.70052 -31.08497 -29.50108 -29.28067 -26.37329 -25.35945 -22.80951 -21.73669 -21.32755 -19.87591 -18.48637 -17.39271 -16.72697 -16.43149 -15.89818 -15.41032 -14.76819 -14.69152 -14.45669 -14.21008 -14.03163 -13.62433 -13.17740 -12.90629 -12.59754 -12.46572 -12.37993 -12.06877 -11.99633 -11.92274 -11.75435 -11.69495 -11.46998 -11.42789 -11.30392 -11.16184 -10.90732 -10.58326 -9.21089 -8.21805 -6.33449 1.38930 1.39598 1.52960 2.39362 3.11545 3.33085 3.70084 3.71800 3.91437 4.21392 4.27247 4.43179 4.50314 4.58450 4.58772 4.67865 4.71317 4.74586 4.82364 4.85449 4.92953 5.01740 5.05036 5.11121 5.18693 5.20790 5.24800 5.37155 5.42979 5.46293 5.47787 5.56328 5.62594 5.67111 5.79968 6.16165 6.33878 6.59829 6.83748 7.35977 8.90590 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036881 B = 0.005384 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.023585 B = 5199.121302 C = 5560.340467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C 0.092 3.908 4 H 0.028 0.972 5 N -0.687 5.687 6 C 0.088 3.912 7 C 0.032 3.968 8 C -0.545 4.545 9 H 0.058 0.942 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.967 3.033 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.277 1.277 16 C -0.088 4.088 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.130 4.130 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.336 0.664 27 H 0.053 0.947 28 H 0.011 0.989 29 H -0.011 1.011 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -4.657 -18.495 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C -0.017 4.017 4 H 0.046 0.954 5 N -0.319 5.319 6 C -0.041 4.041 7 C -0.005 4.005 8 C -0.583 4.583 9 H 0.076 0.924 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.791 3.209 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.107 4.107 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.168 4.168 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.008 0.992 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.303 -5.052 -18.217 18.950 hybrid contribution 1.063 0.766 1.128 1.729 sum 2.365 -4.286 -17.089 17.777 Atomic orbital electron populations 1.21586 0.95207 1.00697 1.01788 1.21500 0.97147 0.94960 1.01074 1.21714 0.95621 0.94858 0.89549 0.95390 1.60586 1.51514 1.15963 1.03861 1.21759 0.92829 0.99259 0.90262 1.18926 0.95367 0.93635 0.92579 1.21627 1.13373 1.26426 0.96880 0.92388 1.25968 0.96636 0.94645 1.02371 1.70112 1.29315 1.29669 1.28043 0.85369 0.78703 0.78248 0.78532 1.18675 1.20194 1.20229 1.21939 1.00933 0.94120 0.93693 1.22390 1.00601 0.97764 0.94303 1.22481 1.01432 0.94656 0.97072 1.22337 0.98738 0.99617 0.95336 1.22273 0.99531 0.96730 0.98284 0.92881 0.92100 0.93970 0.94148 0.90171 0.84500 0.92840 0.97060 0.99216 0.98722 0.92702 0.90174 0.91763 0.90421 0.90832 0.90548 0.91028 0.92288 0.91476 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.47 71.98 0.68 -2.88 16 2 C -0.11 -2.91 5.63 30.60 0.17 -2.74 16 3 C 0.09 2.68 1.58 44.91 0.07 2.75 16 4 H 0.03 0.87 7.69 -2.38 -0.02 0.86 16 5 N -0.69 -25.23 5.47 -491.56 -2.69 -27.92 16 6 C 0.09 3.89 5.47 86.30 0.47 4.36 16 7 C 0.03 1.79 5.19 29.85 0.15 1.94 16 8 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 9 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 10 C 0.00 0.10 5.46 84.66 0.46 0.57 16 11 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 12 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C -0.09 -2.05 2.37 -10.07 -0.02 -2.08 16 17 C -0.11 -2.06 5.27 31.67 0.17 -1.89 16 18 C -0.12 -1.91 6.91 31.88 0.22 -1.69 16 19 C -0.12 -2.36 6.83 31.65 0.22 -2.14 16 20 C -0.13 -3.09 5.59 31.30 0.17 -2.92 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.06 1.41 6.35 -2.39 -0.02 1.40 16 23 H 0.04 1.35 7.62 -2.39 -0.02 1.34 16 24 H 0.04 1.22 7.65 -2.39 -0.02 1.20 16 25 H 0.08 1.73 7.19 -2.39 -0.02 1.72 16 26 H 0.34 12.33 6.64 -89.70 -0.60 11.73 16 27 H 0.05 2.39 7.64 -2.39 -0.02 2.37 16 28 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 29 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.08 1.91 6.41 -2.39 -0.02 1.89 16 33 H 0.06 1.21 7.76 -2.38 -0.02 1.19 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.20 6.85 -2.39 -0.02 1.19 16 Total: -1.00 -63.87 307.55 3.01 -60.87 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.38 Total: 15.96 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.00 Total: -38.47 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.40 Total: -85.43 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.87 3.01 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382773556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.031 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds