Wall clock time and date at job start Thu Apr 9 2020 11:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47427 * 2 1 4 4 H 1.09004 * 109.46724 * 54.99501 * 3 2 1 5 5 C 1.53002 * 109.47233 * 295.00153 * 3 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46974 * 59.99631 * 6 5 3 8 8 C 1.52999 * 109.47000 * 300.00410 * 7 6 5 9 9 H 1.09000 * 109.47160 * 299.99635 * 8 7 6 10 10 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 11 11 N 1.46897 * 109.47346 * 65.00011 * 10 8 7 12 12 C 1.46892 * 111.00300 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47612 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99721 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00551 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99775 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47483 * 90.00289 * 17 15 13 19 19 H 1.48500 * 109.47232 * 209.99756 * 17 15 13 20 20 H 1.48501 * 109.47220 * 330.00074 * 17 15 13 21 21 C 1.52996 * 109.47328 * 174.99684 * 3 2 1 22 22 H 1.09003 * 109.46799 * 60.00212 * 1 2 3 23 23 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47187 * 300.00018 * 1 2 3 25 25 H 1.09001 * 109.47187 * 239.99982 * 2 1 3 26 26 H 1.09003 * 109.46799 * 119.99788 * 2 1 3 27 27 H 1.09002 * 109.47070 * 59.99626 * 5 3 2 28 28 H 1.09000 * 109.46986 * 299.99797 * 5 3 2 29 29 H 1.09000 * 109.47140 * 300.00024 * 6 5 3 30 30 H 1.09001 * 109.46922 * 179.97438 * 6 5 3 31 31 H 1.08993 * 109.46765 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.46866 * 60.00225 * 7 6 5 33 33 H 1.09004 * 109.46579 * 184.99387 * 10 8 7 34 34 H 1.08992 * 109.47046 * 304.99570 * 10 8 7 35 35 H 1.00908 * 110.99715 * 303.95394 * 11 10 8 36 36 H 1.09003 * 109.47171 * 299.99549 * 12 11 10 37 37 H 1.08997 * 109.47757 * 59.99127 * 12 11 10 38 38 H 0.96998 * 120.00136 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.46870 * 60.00217 * 21 3 2 40 40 H 1.09001 * 109.47372 * 300.00367 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 2.1448 3.5692 -1.3071 7 6 3.6696 3.5715 -1.1810 8 6 4.0743 2.8874 0.1263 9 1 3.6394 3.4262 0.9681 10 6 5.5991 2.8903 0.2526 11 7 6.0779 4.2738 0.3735 12 6 7.5410 4.3158 0.4964 13 6 7.9942 5.7480 0.6175 14 1 7.2678 6.5471 0.6049 15 6 9.3360 6.0381 0.7454 16 7 10.2205 5.0649 0.7613 17 14 9.8977 7.8133 0.8948 18 1 9.9312 8.2031 2.3273 19 1 11.2563 7.9533 0.3119 20 1 8.9521 8.6948 0.1639 21 6 3.5648 1.4443 0.1258 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5490 2.1253 -1.3969 28 1 2.0699 1.5875 -2.1492 29 1 1.7098 4.1080 -0.4653 30 1 1.8568 4.0564 -2.2387 31 1 4.0326 4.5992 -1.1813 32 1 4.1046 3.0327 -2.0228 33 1 5.8914 2.3261 1.1382 34 1 6.0379 2.4301 -0.6326 35 1 5.7644 4.8343 -0.4049 36 1 7.8472 3.7613 1.3835 37 1 7.9930 3.8656 -0.3873 38 1 11.1645 5.2689 0.8517 39 1 3.9994 0.9052 -0.7160 40 1 3.8532 0.9569 1.0572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389230333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:49 Heat of formation + Delta-G solvation = -48.718446 kcal Electronic energy + Delta-G solvation = -15697.076154 eV Core-core repulsion = 13316.538930 eV Total energy + Delta-G solvation = -2380.537224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10488 -35.64059 -33.65955 -32.36587 -30.82331 -29.06166 -26.69682 -24.47933 -23.20217 -21.88899 -21.27623 -19.82168 -19.53040 -16.40498 -15.35155 -14.95834 -14.91204 -14.60743 -13.93769 -13.85727 -13.57823 -13.10189 -12.88111 -12.65616 -12.34566 -11.86896 -11.65158 -11.38679 -11.29422 -11.24655 -10.89698 -10.83809 -10.68870 -10.67742 -10.53945 -10.18565 -10.05792 -9.77615 -9.63160 -9.09242 -8.44809 -7.21685 -6.00304 -4.02157 3.34077 3.39488 3.43516 4.45027 4.62382 4.70573 4.82004 5.06151 5.16913 5.25485 5.28625 5.35446 5.40427 5.52116 5.64115 5.67216 5.69223 5.74348 5.77798 5.83873 5.92060 6.03624 6.05939 6.14298 6.17129 6.27584 6.31910 6.40403 6.44538 6.48177 6.65726 6.77869 7.31677 7.47384 7.82505 8.17511 8.46223 8.67940 9.07560 9.62664 11.10920 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062486 B = 0.004395 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.992302 B = 6369.320251 C = 6647.391995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.083 4.083 9 H 0.075 0.925 10 C 0.064 3.936 11 N -0.691 5.691 12 C 0.193 3.807 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.108 4.108 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.327 0.673 36 H 0.027 0.973 37 H -0.015 1.015 38 H 0.261 0.739 39 H 0.058 0.942 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 -8.260 -3.595 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.102 4.102 9 H 0.094 0.906 10 C -0.066 4.066 11 N -0.322 5.322 12 C 0.066 3.934 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.146 4.146 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.144 0.856 36 H 0.045 0.955 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.426 -8.264 -2.900 19.503 hybrid contribution 0.805 0.645 -0.794 1.302 sum -16.621 -7.619 -3.694 18.653 Atomic orbital electron populations 1.21822 0.96214 1.01180 1.01824 1.21578 0.95580 0.96796 1.01826 1.21179 0.95886 0.95334 0.98092 0.91311 1.21624 0.99999 0.96013 0.97430 1.21522 0.96313 0.96356 1.01336 1.21596 0.95068 1.01151 0.97531 1.21177 0.95829 0.95203 0.98017 0.90640 1.21912 0.93148 0.92364 0.99217 1.60702 1.15288 1.08202 1.47970 1.19546 0.80934 0.97267 0.95663 1.21207 0.91913 0.92420 1.49638 0.92000 1.25002 0.96700 0.97522 0.95444 1.69970 1.01619 1.31506 1.50744 0.86478 0.77788 0.84734 0.78272 1.20615 1.21323 1.19847 1.21611 0.94420 0.96913 1.01625 0.92589 0.93172 0.92861 0.92201 0.92119 0.92317 0.92314 0.92093 0.92483 0.91443 0.92568 0.92029 0.96660 0.85568 0.95527 0.99738 0.92951 0.92299 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.12 -1.10 5.40 -26.73 -0.14 -1.25 16 3 C -0.09 -0.91 2.19 -90.62 -0.20 -1.10 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.11 -1.15 4.96 -26.73 -0.13 -1.28 16 6 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 7 C -0.12 -1.57 4.98 -26.73 -0.13 -1.70 16 8 C -0.08 -1.22 2.40 -90.59 -0.22 -1.43 16 9 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 10 C 0.06 1.17 5.15 -3.82 -0.02 1.15 16 11 N -0.69 -15.35 6.49 -115.06 -0.75 -16.09 16 12 C 0.19 5.24 5.44 -4.98 -0.03 5.21 16 13 C -0.51 -14.93 9.32 -34.44 -0.32 -15.25 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.35 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.11 -1.32 4.49 -26.71 -0.12 -1.44 16 22 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 6.57 -51.93 -0.34 0.19 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.33 6.93 6.97 -39.29 -0.27 6.66 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -29.88 309.17 -9.19 -39.08 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.61 Total: -0.03 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.21 Total: -17.96 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.01 Total: -42.75 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.88 -9.19 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389230333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.643 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds