Wall clock time and date at job start Thu Apr 9 2020 11:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.53004 * 109.47214 * 240.00128 * 2 1 3 5 5 C 1.50693 * 109.47134 * 174.99867 * 4 2 1 6 6 H 1.08001 * 120.00367 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99748 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47117 * 90.00461 * 9 7 5 11 11 H 1.48506 * 109.47037 * 210.00532 * 9 7 5 12 12 H 1.48501 * 109.47313 * 330.00052 * 9 7 5 13 13 N 1.46903 * 109.47284 * 120.00060 * 2 1 3 14 14 C 1.46894 * 111.00270 * 275.00229 * 13 2 1 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 2 16 16 C 1.52999 * 109.46927 * 275.00239 * 14 13 2 17 17 C 1.53005 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 14 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 16 20 20 C 1.52997 * 109.47515 * 154.99879 * 14 13 2 21 21 H 1.09002 * 109.47153 * 59.99762 * 20 14 13 22 22 C 1.53002 * 109.46817 * 299.99993 * 20 14 13 23 23 H 1.09000 * 109.47289 * 299.99623 * 1 2 3 24 24 H 1.09002 * 109.47461 * 59.99940 * 1 2 3 25 25 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46976 * 295.00213 * 4 2 1 27 27 H 1.08997 * 109.46889 * 54.99513 * 4 2 1 28 28 H 0.96998 * 119.99524 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00119 * 151.04498 * 13 2 1 30 30 H 1.09002 * 109.46716 * 299.99610 * 16 14 13 31 31 H 1.09000 * 109.47486 * 59.99528 * 16 14 13 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.46935 * 299.99411 * 17 16 14 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 37 37 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47407 * 60.00219 * 22 20 14 39 39 H 1.09000 * 109.46986 * 179.97438 * 22 20 14 40 40 H 1.09002 * 109.47075 * 299.99262 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1935 -2.3579 8 7 3.5763 -1.8378 -3.2995 9 14 6.0921 -1.0622 -2.4362 10 1 6.7000 -2.2149 -1.7242 11 1 6.5297 -1.0703 -3.8553 12 1 6.5267 0.2030 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9808 2.3223 17 6 3.4768 1.9334 3.5179 18 6 3.3716 1.1306 4.8161 19 6 2.0430 0.3723 4.8405 20 6 1.9770 -0.5798 3.6454 21 1 2.8019 -1.2902 3.7016 22 6 0.6484 -1.3381 3.6699 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1369 28 1 4.0607 -2.2445 -4.0349 29 1 2.9173 -1.1205 1.0287 30 1 4.2359 0.2704 2.3785 31 1 3.4862 1.5524 1.3973 32 1 4.4235 2.4733 3.5006 33 1 2.6519 2.6438 3.4621 34 1 4.1965 0.4202 4.8717 35 1 3.4189 1.8092 5.6677 36 1 1.2182 1.0827 4.7848 37 1 1.9683 -0.1999 5.7653 38 1 0.6018 -2.0171 2.8185 39 1 0.5735 -1.9100 4.5947 40 1 -0.1765 -0.6277 3.6138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393690144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:54 Heat of formation + Delta-G solvation = -45.079533 kcal Electronic energy + Delta-G solvation = -16531.714739 eV Core-core repulsion = 14151.335311 eV Total energy + Delta-G solvation = -2380.379429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98228 -35.72395 -32.73704 -32.22438 -30.82993 -27.64877 -27.35454 -25.43926 -23.11644 -21.81410 -20.81305 -19.70963 -19.07334 -16.30800 -15.37452 -14.96339 -14.42698 -14.24823 -14.02378 -13.68644 -13.11510 -12.98550 -12.52601 -12.03423 -11.79547 -11.75865 -11.53572 -11.26593 -11.21619 -11.05568 -10.87010 -10.72215 -10.58635 -10.54725 -10.35385 -10.13783 -9.94017 -9.73604 -9.17024 -9.01840 -8.37617 -7.48501 -6.00902 -4.03452 3.30135 3.36991 3.39243 4.44364 4.76346 4.91383 4.98002 5.23788 5.34608 5.42131 5.43958 5.67740 5.71205 5.75514 5.79050 5.90921 5.99752 6.02800 6.13437 6.20579 6.24832 6.26079 6.31902 6.33568 6.43339 6.49036 6.56347 6.69214 6.76011 6.79282 6.99015 7.00907 7.60391 7.67637 7.99906 8.14925 8.35995 8.42807 9.03031 9.60493 11.10128 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.007903 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.793240 B = 3542.208847 C = 4156.432649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.095 3.905 15 H 0.067 0.933 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.079 4.079 21 H 0.065 0.935 22 C -0.134 4.134 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.353 0.647 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 4.682 13.945 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C -0.016 4.016 15 H 0.085 0.915 16 C -0.189 4.189 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.098 4.098 21 H 0.084 0.916 22 C -0.192 4.192 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.174 0.826 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.400 4.317 13.913 14.959 hybrid contribution 1.923 0.643 -0.423 2.071 sum -1.477 4.960 13.490 14.448 Atomic orbital electron populations 1.21801 0.96953 1.01193 0.99278 1.21577 0.93105 0.95907 0.91512 0.95410 1.19273 0.95369 0.96148 0.90898 1.21190 0.92247 1.34283 1.08206 0.92924 1.24986 0.98099 0.95288 0.95758 1.69962 1.35409 1.35717 1.11984 0.86667 0.86171 0.78382 0.77203 1.20645 1.21269 1.20036 1.60638 1.34507 1.31535 1.04177 1.21544 0.95493 0.93117 0.91439 0.91523 1.22298 0.99445 0.99094 0.98024 1.21481 1.01101 0.97877 0.94825 1.21534 0.97994 0.98846 0.97237 1.21592 0.97223 0.98246 0.98026 1.21058 0.98516 0.96668 0.93540 0.91618 1.21669 0.96192 1.00095 1.01210 0.94585 0.93559 0.92740 0.95695 0.96250 0.93008 0.82588 0.91956 0.91723 0.92627 0.92417 0.92190 0.92669 0.92370 0.92436 0.90921 0.94273 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.40 37.16 0.35 -2.09 16 2 C 0.09 1.83 2.40 -67.71 -0.16 1.67 16 3 H 0.03 0.60 7.11 -51.93 -0.37 0.23 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.24 8.12 -34.44 -0.28 -14.52 16 6 H 0.05 1.40 7.49 -52.49 -0.39 1.00 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -12.76 5.29 -99.74 -0.53 -13.28 16 14 C 0.09 1.50 1.72 -67.72 -0.12 1.38 16 15 H 0.07 1.08 7.11 -51.93 -0.37 0.71 16 16 C -0.15 -2.32 5.16 -26.73 -0.14 -2.46 16 17 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 18 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 19 C -0.11 -1.32 5.20 -26.76 -0.14 -1.46 16 20 C -0.08 -1.09 2.43 -90.65 -0.22 -1.31 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 22 C -0.13 -1.82 9.04 37.16 0.34 -1.48 16 23 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.35 7.35 6.95 -39.29 -0.27 7.08 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.12 7.60 -51.93 -0.39 0.72 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -27.98 308.19 -8.70 -36.68 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.62 Total: 2.75 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.91 Total: -21.40 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.14 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.98 -8.70 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393690144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.397 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds