Wall clock time and date at job start Thu Apr 9 2020 11:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.53004 * 109.47214 * 240.00128 * 2 1 3 5 5 C 1.50693 * 109.47134 * 174.99867 * 4 2 1 6 6 H 1.08001 * 120.00367 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99748 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47117 * 90.00461 * 9 7 5 11 11 H 1.48506 * 109.47037 * 210.00532 * 9 7 5 12 12 H 1.48501 * 109.47313 * 330.00052 * 9 7 5 13 13 N 1.46903 * 109.47284 * 120.00060 * 2 1 3 14 14 C 1.46894 * 111.00270 * 275.00229 * 13 2 1 15 15 H 1.09002 * 109.47104 * 34.99612 * 14 13 2 16 16 C 1.52999 * 109.46927 * 275.00239 * 14 13 2 17 17 C 1.53005 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 14 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 16 20 20 C 1.52997 * 109.47515 * 154.99879 * 14 13 2 21 21 H 1.09002 * 109.47153 * 59.99762 * 20 14 13 22 22 C 1.53002 * 109.46817 * 299.99993 * 20 14 13 23 23 H 1.09000 * 109.47289 * 299.99623 * 1 2 3 24 24 H 1.09002 * 109.47461 * 59.99940 * 1 2 3 25 25 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46976 * 295.00213 * 4 2 1 27 27 H 1.08997 * 109.46889 * 54.99513 * 4 2 1 28 28 H 0.96998 * 119.99524 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00119 * 151.04498 * 13 2 1 30 30 H 1.09002 * 109.46716 * 299.99610 * 16 14 13 31 31 H 1.09000 * 109.47486 * 59.99528 * 16 14 13 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.46935 * 299.99411 * 17 16 14 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 37 37 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47407 * 60.00219 * 22 20 14 39 39 H 1.09000 * 109.46986 * 179.97438 * 22 20 14 40 40 H 1.09002 * 109.47075 * 299.99262 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1935 -2.3579 8 7 3.5763 -1.8378 -3.2995 9 14 6.0921 -1.0622 -2.4362 10 1 6.7000 -2.2149 -1.7242 11 1 6.5297 -1.0703 -3.8553 12 1 6.5267 0.2030 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2576 0.9328 2.2907 16 6 3.4111 0.9808 2.3223 17 6 3.4768 1.9334 3.5179 18 6 3.3716 1.1306 4.8161 19 6 2.0430 0.3723 4.8405 20 6 1.9770 -0.5798 3.6454 21 1 2.8019 -1.2902 3.7016 22 6 0.6484 -1.3381 3.6699 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1369 28 1 4.0607 -2.2445 -4.0349 29 1 2.9173 -1.1205 1.0287 30 1 4.2359 0.2704 2.3785 31 1 3.4862 1.5524 1.3973 32 1 4.4235 2.4733 3.5006 33 1 2.6519 2.6438 3.4621 34 1 4.1965 0.4202 4.8717 35 1 3.4189 1.8092 5.6677 36 1 1.2182 1.0827 4.7848 37 1 1.9683 -0.1999 5.7653 38 1 0.6018 -2.0171 2.8185 39 1 0.5735 -1.9100 4.5947 40 1 -0.1765 -0.6277 3.6138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393690144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:54 Heat of formation + Delta-G solvation = -60.400134 kcal Electronic energy + Delta-G solvation = -16532.379091 eV Core-core repulsion = 14151.335311 eV Total energy + Delta-G solvation = -2381.043780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21459 -37.29303 -34.70285 -33.38930 -32.28755 -29.32978 -28.91490 -26.59353 -25.07993 -23.07804 -21.88604 -21.15922 -20.46575 -18.49013 -16.79866 -16.58472 -16.13868 -15.42220 -15.14076 -15.02436 -14.61155 -14.18024 -14.10648 -13.53301 -13.41953 -13.13390 -13.11868 -12.71650 -12.62239 -12.60183 -12.41552 -12.35850 -12.10203 -11.89831 -11.67751 -11.29899 -11.28002 -11.16379 -10.97299 -10.79133 -10.56923 -9.01158 -8.19408 -6.29159 1.37968 1.38332 1.48665 2.39202 3.12280 3.45857 3.79836 3.93380 4.13268 4.28763 4.30956 4.38262 4.54267 4.59634 4.63385 4.66516 4.69358 4.77314 4.90237 4.97384 5.02462 5.13183 5.17144 5.21223 5.22777 5.27689 5.33206 5.35171 5.39421 5.48636 5.51354 5.56972 5.68142 5.69250 5.85855 6.22499 6.52827 6.72651 6.86246 7.39272 8.92429 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.007903 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.793240 B = 3542.208847 C = 4156.432649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.099 3.901 3 H 0.020 0.980 4 C 0.028 3.972 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.676 5.676 14 C 0.096 3.904 15 H 0.067 0.933 16 C -0.147 4.147 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.076 4.076 21 H 0.056 0.944 22 C -0.130 4.130 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.048 0.952 26 H -0.004 1.004 27 H -0.008 1.008 28 H 0.262 0.738 29 H 0.339 0.661 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 5.613 16.196 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 H 0.038 0.962 4 C -0.009 4.009 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.086 0.914 16 C -0.186 4.186 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.095 4.095 21 H 0.074 0.926 22 C -0.188 4.188 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.950 5.261 16.187 17.274 hybrid contribution 1.748 0.349 -1.130 2.110 sum -1.202 5.610 15.056 16.112 Atomic orbital electron populations 1.21704 0.94753 1.01303 1.00623 1.21361 0.94796 0.94673 0.90290 0.96155 1.19129 0.94855 0.94642 0.92305 1.21516 0.93233 1.33829 1.08164 0.92440 1.25876 1.03172 0.94942 0.95413 1.70096 1.37447 1.36838 1.12754 0.85559 0.80083 0.78784 0.77281 1.19802 1.20972 1.19104 1.60699 1.33565 1.32204 1.04211 1.21644 0.95664 0.92937 0.91169 0.91431 1.22232 0.98794 0.99170 0.98412 1.21461 1.01812 0.97453 0.94137 1.21528 0.97748 0.98986 0.97054 1.21562 0.97611 0.97980 0.97386 1.21037 0.98365 0.96787 0.93274 0.92579 1.21617 0.96133 0.99889 1.01133 0.92183 0.93226 0.93236 0.98568 0.98994 0.92890 0.84154 0.93048 0.94252 0.91941 0.91746 0.92457 0.90422 0.91683 0.90677 0.93306 0.92422 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.40 71.98 0.68 -3.86 16 2 C 0.10 4.15 2.40 44.91 0.11 4.26 16 3 H 0.02 0.89 7.11 -2.39 -0.02 0.87 16 4 C 0.03 1.49 4.57 29.85 0.14 1.62 16 5 C -0.53 -29.59 8.12 25.60 0.21 -29.39 16 6 H 0.06 3.09 7.49 -2.91 -0.02 3.07 16 7 C 0.00 0.23 5.46 84.66 0.46 0.69 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.68 -25.72 5.29 -469.48 -2.48 -28.21 16 14 C 0.10 2.94 1.72 44.92 0.08 3.02 16 15 H 0.07 2.08 7.11 -2.39 -0.02 2.06 16 16 C -0.15 -4.46 5.16 30.60 0.16 -4.31 16 17 C -0.11 -2.56 5.92 30.60 0.18 -2.38 16 18 C -0.12 -2.27 5.92 30.59 0.18 -2.09 16 19 C -0.11 -2.15 5.20 30.58 0.16 -1.99 16 20 C -0.08 -1.94 2.43 -10.81 -0.03 -1.97 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 22 C -0.13 -3.28 9.04 71.98 0.65 -2.62 16 23 H 0.06 1.86 7.43 -2.39 -0.02 1.85 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.34 14.47 6.95 -89.69 -0.62 13.85 16 30 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.04 1.37 7.43 -2.39 -0.02 1.35 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.46 7.60 -2.39 -0.02 1.44 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -60.77 308.19 3.14 -57.63 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.35 Total: 19.69 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 2.97 Total: -39.02 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -2.20 Total: -84.79 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.77 3.14 -57.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393690144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.775 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds