Wall clock time and date at job start Thu Apr 9 2020 11:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46470 * 60.00276 * 9 7 5 11 11 H 1.48495 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47160 * 300.00311 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46895 * 111.00561 * 275.00137 * 13 2 1 15 15 H 1.09006 * 109.46781 * 34.99707 * 14 13 2 16 16 C 1.52999 * 109.47271 * 275.00382 * 14 13 2 17 17 C 1.53003 * 109.47094 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47272 * 59.99527 * 17 16 14 19 19 C 1.52999 * 109.47447 * 300.00257 * 18 17 16 20 20 C 1.52994 * 109.47223 * 154.99831 * 14 13 2 21 21 H 1.08998 * 109.47177 * 299.99898 * 20 14 13 22 22 C 1.53001 * 109.47208 * 60.00277 * 20 14 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 27 27 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 28 28 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99706 * 38.96022 * 13 2 1 30 30 H 1.09006 * 109.46667 * 299.99395 * 16 14 13 31 31 H 1.08993 * 109.47394 * 59.99401 * 16 14 13 32 32 H 1.09005 * 109.46977 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.46761 * 299.98986 * 17 16 14 34 34 H 1.09006 * 109.47343 * 60.00034 * 18 17 16 35 35 H 1.09007 * 109.47155 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.47394 * 180.02562 * 19 18 17 37 37 H 1.09006 * 109.46667 * 300.00191 * 19 18 17 38 38 H 1.08999 * 109.46685 * 60.00048 * 22 20 14 39 39 H 1.09001 * 109.47216 * 179.97438 * 22 20 14 40 40 H 1.08995 * 109.47022 * 300.00128 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.6846 -1.6861 -1.2269 11 1 6.5872 -1.7623 -3.6484 12 1 6.4845 0.3698 -2.4972 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2576 0.9330 2.2907 16 6 3.4110 0.9810 2.3224 17 6 3.4761 1.9345 3.5172 18 6 3.3704 1.1328 4.8159 19 6 2.0418 0.3744 4.8405 20 6 1.9770 -0.5796 3.6454 21 1 1.0304 -1.1198 3.6629 22 6 3.1348 -1.5767 3.7243 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2617 -2.1369 28 1 4.0610 -2.2453 -4.0343 29 1 1.4495 -1.4979 1.4101 30 1 4.2359 0.2706 2.3787 31 1 3.4862 1.5525 1.3973 32 1 4.4229 2.4745 3.4999 33 1 2.6513 2.6449 3.4604 34 1 4.1953 0.4224 4.8726 35 1 3.4172 1.8121 5.6671 36 1 1.9663 -0.1964 5.7659 37 1 1.2169 1.0848 4.7837 38 1 4.0813 -1.0364 3.7069 39 1 3.0599 -2.1479 4.6497 40 1 3.0882 -2.2556 2.8730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393690145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:56 Heat of formation + Delta-G solvation = -35.233308 kcal Electronic energy + Delta-G solvation = -16603.428868 eV Core-core repulsion = 14223.476404 eV Total energy + Delta-G solvation = -2379.952465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23663 -35.84684 -32.63342 -31.74904 -30.70616 -27.86482 -27.11458 -25.86177 -23.05902 -22.01155 -21.43462 -19.44909 -18.21626 -16.19703 -15.64797 -14.83264 -14.72841 -14.26992 -14.05357 -13.54751 -13.19003 -12.72699 -12.45430 -12.29407 -11.98011 -11.72617 -11.49018 -11.40676 -11.28447 -11.02972 -10.90278 -10.76254 -10.57762 -10.46681 -10.09071 -9.98903 -9.81498 -9.61492 -9.14672 -8.91421 -8.18905 -7.43411 -5.81546 -3.78409 3.44373 3.47974 3.51477 4.61710 4.70384 4.89231 4.90663 5.21247 5.40473 5.51974 5.53503 5.56214 5.67001 5.73974 5.77811 5.84897 5.87972 5.97217 6.00763 6.09429 6.15630 6.22814 6.24849 6.29851 6.31908 6.53222 6.57970 6.66822 6.70466 6.72098 6.91907 7.13955 7.67473 7.78691 8.13864 8.15259 8.29099 8.68360 9.26918 9.82315 11.30767 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.008046 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.027686 B = 3479.116979 C = 4002.364295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.658 5.658 14 C 0.095 3.905 15 H 0.031 0.969 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.091 4.091 21 H 0.061 0.939 22 C -0.143 4.143 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.257 0.743 29 H 0.329 0.671 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 4.529 14.848 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.288 5.288 14 C -0.015 4.015 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.110 4.110 21 H 0.079 0.921 22 C -0.200 4.200 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.747 4.508 14.509 15.440 hybrid contribution 0.017 0.113 0.042 0.121 sum -2.730 4.621 14.551 15.509 Atomic orbital electron populations 1.22562 0.99830 1.01037 1.00424 1.21808 0.89602 0.98148 0.92463 0.91894 1.19095 0.96198 0.95307 0.89754 1.21127 0.91908 1.32584 1.06622 0.92311 1.25004 0.97819 0.96067 0.96130 1.69958 1.35162 1.37158 1.12448 0.86726 0.86670 0.77888 0.77047 1.20416 1.21720 1.20615 1.60574 1.57537 1.08352 1.02374 1.21441 0.96438 0.93778 0.89813 0.95151 1.21560 0.98191 0.97822 0.97039 1.21553 1.01098 0.98000 0.95050 1.21566 0.97974 0.98850 0.97332 1.21537 0.97601 0.98041 0.97683 1.21258 0.98970 0.96292 0.94499 0.92092 1.21833 0.98302 0.98787 1.01045 0.93147 0.92659 0.94549 0.96629 0.96709 0.93390 0.85269 0.90918 0.91817 0.92367 0.92690 0.91623 0.92816 0.92419 0.92539 0.92118 0.94124 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.15 37.16 0.34 -2.76 16 2 C 0.09 1.82 2.34 -67.72 -0.16 1.66 16 3 H 0.06 1.33 7.11 -51.93 -0.37 0.96 16 4 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 5 C -0.48 -13.72 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.83 13.29 55.43 0.74 -27.10 16 9 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.66 -12.20 5.05 -99.75 -0.50 -12.71 16 14 C 0.10 1.48 1.99 -67.72 -0.14 1.35 16 15 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 16 C -0.11 -1.72 5.13 -26.73 -0.14 -1.85 16 17 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 18 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 19 C -0.11 -1.25 5.45 -26.70 -0.15 -1.40 16 20 C -0.09 -1.20 2.57 -90.59 -0.23 -1.43 16 21 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 22 C -0.14 -1.94 8.34 37.16 0.31 -1.63 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.33 5.80 7.93 -39.29 -0.31 5.49 16 30 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 31 H 0.06 1.14 7.43 -51.93 -0.39 0.75 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.85 4.81 -51.93 -0.25 0.60 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.06 7.48 -51.93 -0.39 0.68 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -29.62 302.45 -8.55 -38.17 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.32 Total: 0.89 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.00 Total: -21.20 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.23 Total: -39.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.62 -8.55 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393690145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.932 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds