Wall clock time and date at job start Thu Apr 9 2020 11:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46470 * 60.00276 * 9 7 5 11 11 H 1.48495 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47160 * 300.00311 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46895 * 111.00561 * 275.00137 * 13 2 1 15 15 H 1.09006 * 109.46781 * 34.99707 * 14 13 2 16 16 C 1.52999 * 109.47271 * 275.00382 * 14 13 2 17 17 C 1.53003 * 109.47094 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47272 * 59.99527 * 17 16 14 19 19 C 1.52999 * 109.47447 * 300.00257 * 18 17 16 20 20 C 1.52994 * 109.47223 * 154.99831 * 14 13 2 21 21 H 1.08998 * 109.47177 * 299.99898 * 20 14 13 22 22 C 1.53001 * 109.47208 * 60.00277 * 20 14 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 27 27 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 28 28 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 29 29 H 1.00906 * 110.99706 * 38.96022 * 13 2 1 30 30 H 1.09006 * 109.46667 * 299.99395 * 16 14 13 31 31 H 1.08993 * 109.47394 * 59.99401 * 16 14 13 32 32 H 1.09005 * 109.46977 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.46761 * 299.98986 * 17 16 14 34 34 H 1.09006 * 109.47343 * 60.00034 * 18 17 16 35 35 H 1.09007 * 109.47155 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.47394 * 180.02562 * 19 18 17 37 37 H 1.09006 * 109.46667 * 300.00191 * 19 18 17 38 38 H 1.08999 * 109.46685 * 60.00048 * 22 20 14 39 39 H 1.09001 * 109.47216 * 179.97438 * 22 20 14 40 40 H 1.08995 * 109.47022 * 300.00128 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.6846 -1.6861 -1.2269 11 1 6.5872 -1.7623 -3.6484 12 1 6.4845 0.3698 -2.4972 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2576 0.9330 2.2907 16 6 3.4110 0.9810 2.3224 17 6 3.4761 1.9345 3.5172 18 6 3.3704 1.1328 4.8159 19 6 2.0418 0.3744 4.8405 20 6 1.9770 -0.5796 3.6454 21 1 1.0304 -1.1198 3.6629 22 6 3.1348 -1.5767 3.7243 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2617 -2.1369 28 1 4.0610 -2.2453 -4.0343 29 1 1.4495 -1.4979 1.4101 30 1 4.2359 0.2706 2.3787 31 1 3.4862 1.5525 1.3973 32 1 4.4229 2.4745 3.4999 33 1 2.6513 2.6449 3.4604 34 1 4.1953 0.4224 4.8726 35 1 3.4172 1.8121 5.6671 36 1 1.9663 -0.1964 5.7659 37 1 1.2169 1.0848 4.7837 38 1 4.0813 -1.0364 3.7069 39 1 3.0599 -2.1479 4.6497 40 1 3.0882 -2.2556 2.8730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393690145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:55 Heat of formation + Delta-G solvation = -52.363108 kcal Electronic energy + Delta-G solvation = -16604.171672 eV Core-core repulsion = 14223.476404 eV Total energy + Delta-G solvation = -2380.695268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41415 -37.37847 -34.69067 -32.93973 -32.08627 -29.47989 -28.71761 -27.01069 -25.05351 -23.20637 -22.57695 -21.10386 -19.33525 -18.35984 -16.92918 -16.54045 -16.10177 -15.81117 -15.25985 -14.80085 -14.64026 -14.08150 -14.06615 -13.56735 -13.47733 -13.21755 -13.10764 -12.90090 -12.57986 -12.45870 -12.38972 -12.36556 -12.04556 -11.84120 -11.81413 -11.24914 -11.10745 -11.03784 -10.82280 -10.76992 -10.46056 -8.91096 -8.07918 -6.11971 1.40346 1.43456 1.50725 2.47917 3.23664 3.42136 3.83747 3.88059 4.14820 4.27786 4.35363 4.42299 4.47322 4.51444 4.57558 4.59521 4.70003 4.73159 4.88656 4.94648 5.03546 5.11056 5.16227 5.19605 5.22877 5.29088 5.32432 5.35185 5.48574 5.49718 5.52109 5.59978 5.71196 5.78176 5.92409 6.39192 6.58974 6.82773 7.02008 7.53101 9.04280 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.008046 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.027686 B = 3479.116979 C = 4002.364295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.053 0.947 4 C 0.039 3.961 5 C -0.493 4.493 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.098 3.902 15 H 0.035 0.965 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.087 4.087 21 H 0.069 0.931 22 C -0.139 4.139 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.062 0.938 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.258 0.742 29 H 0.334 0.666 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 5.264 17.186 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 H 0.071 0.929 4 C 0.002 3.998 5 C -0.532 4.532 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.305 5.305 14 C -0.012 4.012 15 H 0.053 0.947 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.106 4.106 21 H 0.088 0.912 22 C -0.196 4.196 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.008 0.992 27 H 0.006 0.994 28 H 0.066 0.934 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.667 5.254 16.866 17.865 hybrid contribution -0.012 -0.124 -0.699 0.710 sum -2.679 5.130 16.167 17.172 Atomic orbital electron populations 1.22412 0.97055 1.01649 1.01665 1.21435 0.91741 0.96651 0.91077 0.92861 1.18978 0.95160 0.94060 0.91646 1.21453 0.93338 1.32021 1.06357 0.92520 1.25859 1.02776 0.95835 0.95861 1.70093 1.37056 1.38208 1.13131 0.85664 0.80812 0.78300 0.77199 1.19755 1.21256 1.19593 1.60416 1.57892 1.09211 1.02961 1.21489 0.96210 0.93585 0.89882 0.94747 1.21527 0.97821 0.97799 0.97360 1.21513 1.01745 0.97530 0.94374 1.21561 0.97939 0.98985 0.96988 1.21524 0.97774 0.97847 0.97250 1.21239 0.99065 0.96352 0.93903 0.91247 1.21786 0.98259 0.98597 1.00996 0.92860 0.92775 0.91882 0.99245 0.99364 0.93363 0.84758 0.92758 0.94746 0.91865 0.91939 0.92011 0.90639 0.90542 0.91733 0.92859 0.92046 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 9.15 71.98 0.66 -5.02 16 2 C 0.10 4.16 2.34 44.91 0.11 4.27 16 3 H 0.05 2.29 7.11 -2.39 -0.02 2.27 16 4 C 0.04 2.09 4.65 29.85 0.14 2.23 16 5 C -0.49 -28.70 8.84 25.60 0.23 -28.47 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 8 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 9 Si 0.95 46.56 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.67 -25.02 5.05 -469.49 -2.37 -27.39 16 14 C 0.10 2.93 1.99 44.91 0.09 3.02 16 15 H 0.03 1.02 7.11 -2.38 -0.02 1.00 16 16 C -0.11 -3.35 5.13 30.59 0.16 -3.20 16 17 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 18 C -0.12 -2.29 5.65 30.59 0.17 -2.12 16 19 C -0.11 -2.02 5.45 30.61 0.17 -1.85 16 20 C -0.09 -2.08 2.57 -10.78 -0.03 -2.11 16 21 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 22 C -0.14 -3.59 8.34 71.98 0.60 -2.99 16 23 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.79 7.43 -2.38 -0.02 1.77 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.33 11.69 7.93 -89.69 -0.71 10.98 16 30 H 0.05 1.88 6.43 -2.38 -0.02 1.86 16 31 H 0.03 1.25 7.43 -2.39 -0.02 1.23 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.27 6.43 -2.38 -0.02 1.25 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.05 1.44 4.81 -2.39 -0.01 1.43 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.34 7.48 -2.39 -0.02 1.33 16 Total: -1.00 -64.61 302.45 3.14 -61.47 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.27 Total: 15.04 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 2.93 Total: -38.72 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.09 Total: -86.36 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -64.61 3.14 -61.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393690145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.102 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds