Wall clock time and date at job start Thu Apr 9 2020 11:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.53007 * 109.46805 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47090 * 54.99791 * 4 3 2 6 6 C 1.52998 * 109.47131 * 175.00266 * 4 3 2 7 7 N 1.46907 * 109.46793 * 294.99984 * 4 3 2 8 8 C 1.46842 * 110.99676 * 175.00169 * 7 4 3 9 9 C 1.53036 * 109.52190 * 185.84074 * 8 7 4 10 10 C 1.53123 * 109.27788 * 300.81892 * 9 8 7 11 11 C 1.50697 * 109.52570 * 177.56259 * 10 9 8 12 12 H 1.08006 * 119.99571 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00379 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46742 * 90.00033 * 15 13 11 17 17 H 1.48504 * 109.46822 * 209.99507 * 15 13 11 18 18 H 1.48495 * 109.47186 * 329.99783 * 15 13 11 19 19 C 1.53123 * 109.16001 * 57.65365 * 10 9 8 20 20 C 1.46848 * 110.99958 * 299.21231 * 7 4 3 21 21 H 1.09003 * 109.46503 * 299.99517 * 1 2 3 22 22 H 1.08998 * 109.47052 * 59.99385 * 1 2 3 23 23 H 1.08995 * 109.46946 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46503 * 240.00483 * 2 1 3 25 25 H 1.08999 * 109.47525 * 120.00374 * 2 1 3 26 26 H 1.08999 * 109.47415 * 60.00440 * 3 2 1 27 27 H 1.08998 * 109.47043 * 300.00027 * 3 2 1 28 28 H 1.08998 * 109.46541 * 299.99596 * 6 4 3 29 29 H 1.08996 * 109.47092 * 59.99468 * 6 4 3 30 30 H 1.09003 * 109.47067 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46766 * 65.82407 * 8 7 4 32 32 H 1.09000 * 109.46420 * 305.85141 * 8 7 4 33 33 H 1.09000 * 109.50632 * 60.76184 * 9 8 7 34 34 H 1.09006 * 109.50216 * 180.87978 * 9 8 7 35 35 H 1.09007 * 109.52268 * 297.75177 * 10 9 8 36 36 H 0.97004 * 119.99991 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.50416 * 182.40514 * 19 10 9 38 38 H 1.08997 * 109.49749 * 62.28489 * 19 10 9 39 39 H 1.09003 * 109.46014 * 294.17985 * 20 7 4 40 40 H 1.08995 * 109.46374 * 54.14015 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0800 2.8795 -0.1263 7 7 4.0602 0.8570 1.2544 8 6 5.5232 0.7314 1.2403 9 6 5.9847 -0.0122 2.4958 10 6 5.5321 0.7620 3.7369 11 6 5.9315 0.0041 4.9767 12 1 6.4556 -0.9362 4.8894 13 6 5.6271 0.5106 6.2224 14 7 4.9886 1.6554 6.3287 15 14 6.1217 -0.4293 7.7592 16 1 7.4762 0.0021 8.1887 17 1 5.1466 -0.1519 8.8443 18 1 6.1354 -1.8850 7.4661 19 6 4.0095 0.9209 3.7026 20 6 3.6053 1.6374 2.4122 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8935 -0.5139 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.7163 3.3139 -1.0575 29 1 3.7170 3.4688 0.7157 30 1 5.1701 2.8795 -0.1263 31 1 5.9728 1.7242 1.2203 32 1 5.8315 0.1753 0.3550 33 1 5.5465 -1.0101 2.5095 34 1 7.0719 -0.0915 2.4927 35 1 6.0010 1.7461 3.7435 36 1 4.7747 2.0119 7.2051 37 1 3.6854 1.5082 4.5617 38 1 3.5403 -0.0623 3.7352 39 1 4.0638 2.6259 2.3866 40 1 2.5206 1.7394 2.3778 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397203579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:02 Heat of formation + Delta-G solvation = -26.033172 kcal Electronic energy + Delta-G solvation = -16568.117869 eV Core-core repulsion = 14188.564353 eV Total energy + Delta-G solvation = -2379.553517 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.92021 -35.50838 -33.35500 -31.70315 -29.77242 -29.18694 -26.56470 -25.37073 -22.46079 -22.08516 -21.19864 -19.62832 -18.18488 -16.37058 -15.79690 -14.53601 -14.51685 -14.18280 -13.80554 -13.67682 -13.08590 -12.78770 -12.66785 -12.42111 -11.97213 -11.85285 -11.57905 -11.34425 -11.14789 -10.87863 -10.66087 -10.60070 -10.49765 -10.29037 -10.24232 -10.05696 -9.82427 -9.34383 -8.88800 -8.62117 -8.24318 -7.57349 -5.92854 -3.97852 3.33818 3.40469 3.44267 4.48037 4.52554 4.94171 5.25670 5.28108 5.37380 5.47117 5.56016 5.70265 5.75378 5.78730 5.88435 6.03915 6.05952 6.08638 6.11913 6.16102 6.27967 6.30747 6.43475 6.43568 6.55595 6.68663 6.71640 6.76330 6.94093 7.15718 7.25636 7.52657 7.71078 7.81983 7.91821 8.11638 8.22738 8.54023 9.05936 9.66214 11.13280 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.006840 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.473546 B = 4092.383389 C = 4389.563842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.078 3.922 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.525 5.525 8 C 0.059 3.941 9 C -0.106 4.106 10 C 0.048 3.952 11 C -0.509 4.509 12 H 0.053 0.947 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.103 4.103 20 C 0.053 3.947 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.023 0.977 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 0.315 -11.963 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.149 4.149 4 C -0.031 4.031 5 H 0.091 0.909 6 C -0.245 4.245 7 N -0.249 5.249 8 C -0.069 4.069 9 C -0.144 4.144 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.141 4.141 20 C -0.075 4.075 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.459 -0.043 -11.775 12.979 hybrid contribution 0.619 0.456 0.786 1.100 sum -4.840 0.413 -10.988 12.014 Atomic orbital electron populations 1.21794 0.96860 1.01090 1.01155 1.21421 0.94425 0.96846 1.02779 1.21689 0.94427 0.97337 1.01401 1.21724 0.95002 0.92909 0.93512 0.90920 1.22471 1.01496 0.98913 1.01638 1.62209 1.10853 1.50485 1.01394 1.22106 0.87261 0.98510 0.98980 1.21675 0.98619 0.99556 0.94547 1.18676 0.92163 0.95064 0.91130 1.21225 1.36228 1.06531 0.90728 0.92832 1.24966 0.95208 0.94965 0.98898 1.69883 1.40885 1.18919 1.23501 0.86648 0.78198 0.80371 0.83088 1.20843 1.21325 1.19973 1.21643 0.99081 0.99212 0.94206 1.22330 0.98468 0.94897 0.91759 0.92943 0.93511 0.93169 0.92843 0.90322 0.91620 0.92607 0.92938 0.92229 0.92631 0.95706 0.92748 0.92589 0.93419 0.96310 0.93175 0.89175 0.93990 0.95848 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.52 5.82 -26.73 -0.16 -1.67 16 3 C -0.11 -1.45 4.50 -26.73 -0.12 -1.57 16 4 C 0.08 1.12 2.35 -67.71 -0.16 0.96 16 5 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 6 C -0.19 -2.56 8.50 37.16 0.32 -2.25 16 7 N -0.53 -9.29 4.10 -226.69 -0.93 -10.22 16 8 C 0.06 1.08 5.02 -3.84 -0.02 1.06 16 9 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 10 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 11 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 12 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 13 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -25.71 11.37 55.43 0.63 -25.07 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 20 C 0.05 1.04 4.64 -3.84 -0.02 1.02 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 26 H 0.07 0.93 6.05 -51.93 -0.31 0.61 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 6.52 -51.93 -0.34 0.54 16 30 H 0.05 0.79 6.65 -51.93 -0.35 0.44 16 31 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 32 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.48 6.62 -51.93 -0.34 0.13 16 40 H 0.06 1.07 5.93 -51.93 -0.31 0.76 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -27.77 299.62 -8.79 -36.56 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.33 Total: -1.65 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.65 Total: -20.65 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.30 Total: -35.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.77 -8.79 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397203579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.527 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds