Wall clock time and date at job start Thu Apr 9 2020 11:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.53007 * 109.46805 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47090 * 54.99791 * 4 3 2 6 6 C 1.52998 * 109.47131 * 175.00266 * 4 3 2 7 7 N 1.46907 * 109.46793 * 294.99984 * 4 3 2 8 8 C 1.46842 * 110.99676 * 175.00169 * 7 4 3 9 9 C 1.53036 * 109.52190 * 185.84074 * 8 7 4 10 10 C 1.53123 * 109.27788 * 300.81892 * 9 8 7 11 11 C 1.50697 * 109.52570 * 177.56259 * 10 9 8 12 12 H 1.08006 * 119.99571 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00379 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46742 * 90.00033 * 15 13 11 17 17 H 1.48504 * 109.46822 * 209.99507 * 15 13 11 18 18 H 1.48495 * 109.47186 * 329.99783 * 15 13 11 19 19 C 1.53123 * 109.16001 * 57.65365 * 10 9 8 20 20 C 1.46848 * 110.99958 * 299.21231 * 7 4 3 21 21 H 1.09003 * 109.46503 * 299.99517 * 1 2 3 22 22 H 1.08998 * 109.47052 * 59.99385 * 1 2 3 23 23 H 1.08995 * 109.46946 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46503 * 240.00483 * 2 1 3 25 25 H 1.08999 * 109.47525 * 120.00374 * 2 1 3 26 26 H 1.08999 * 109.47415 * 60.00440 * 3 2 1 27 27 H 1.08998 * 109.47043 * 300.00027 * 3 2 1 28 28 H 1.08998 * 109.46541 * 299.99596 * 6 4 3 29 29 H 1.08996 * 109.47092 * 59.99468 * 6 4 3 30 30 H 1.09003 * 109.47067 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.46766 * 65.82407 * 8 7 4 32 32 H 1.09000 * 109.46420 * 305.85141 * 8 7 4 33 33 H 1.09000 * 109.50632 * 60.76184 * 9 8 7 34 34 H 1.09006 * 109.50216 * 180.87978 * 9 8 7 35 35 H 1.09007 * 109.52268 * 297.75177 * 10 9 8 36 36 H 0.97004 * 119.99991 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.50416 * 182.40514 * 19 10 9 38 38 H 1.08997 * 109.49749 * 62.28489 * 19 10 9 39 39 H 1.09003 * 109.46014 * 294.17985 * 20 7 4 40 40 H 1.08995 * 109.46374 * 54.14015 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0800 2.8795 -0.1263 7 7 4.0602 0.8570 1.2544 8 6 5.5232 0.7314 1.2403 9 6 5.9847 -0.0122 2.4958 10 6 5.5321 0.7620 3.7369 11 6 5.9315 0.0041 4.9767 12 1 6.4556 -0.9362 4.8894 13 6 5.6271 0.5106 6.2224 14 7 4.9886 1.6554 6.3287 15 14 6.1217 -0.4293 7.7592 16 1 7.4762 0.0021 8.1887 17 1 5.1466 -0.1519 8.8443 18 1 6.1354 -1.8850 7.4661 19 6 4.0095 0.9209 3.7026 20 6 3.6053 1.6374 2.4122 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8935 -0.5139 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.7163 3.3139 -1.0575 29 1 3.7170 3.4688 0.7157 30 1 5.1701 2.8795 -0.1263 31 1 5.9728 1.7242 1.2203 32 1 5.8315 0.1753 0.3550 33 1 5.5465 -1.0101 2.5095 34 1 7.0719 -0.0915 2.4927 35 1 6.0010 1.7461 3.7435 36 1 4.7747 2.0119 7.2051 37 1 3.6854 1.5082 4.5617 38 1 3.5403 -0.0623 3.7352 39 1 4.0638 2.6259 2.3866 40 1 2.5206 1.7394 2.3778 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397203579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:02 Heat of formation + Delta-G solvation = -41.072331 kcal Electronic energy + Delta-G solvation = -16568.770016 eV Core-core repulsion = 14188.564353 eV Total energy + Delta-G solvation = -2380.205664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37957 -37.03141 -34.91317 -33.35121 -31.46746 -30.71500 -27.63733 -27.24236 -24.14857 -23.71703 -22.32600 -21.09453 -19.82658 -18.43597 -17.21237 -16.48153 -15.84480 -15.43223 -15.18193 -15.02810 -14.76634 -14.32837 -14.11081 -13.83262 -13.45186 -13.25058 -12.98851 -12.70702 -12.64421 -12.62171 -12.35588 -12.15603 -11.91170 -11.81558 -11.60728 -11.37246 -11.30081 -11.24511 -10.76811 -10.57341 -10.35274 -9.01163 -8.07243 -6.20616 1.40556 1.41341 1.51813 2.44053 3.12491 3.19784 3.86002 4.16158 4.19769 4.30288 4.34694 4.43598 4.46736 4.59202 4.64073 4.71063 4.75658 4.83918 4.87750 4.96283 5.00015 5.04137 5.10054 5.12954 5.15696 5.27202 5.32093 5.37644 5.42715 5.54226 5.60161 5.63742 5.68760 6.02991 6.07649 6.38147 6.42635 6.47164 6.91274 7.46980 8.97271 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.006840 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.473546 B = 4092.383389 C = 4389.563842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.107 4.107 4 C 0.076 3.924 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.529 5.529 8 C 0.066 3.934 9 C -0.100 4.100 10 C 0.045 3.955 11 C -0.533 4.533 12 H 0.050 0.950 13 C 0.011 3.989 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.093 4.093 20 C 0.069 3.931 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.050 0.950 35 H -0.015 1.015 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.014 0.986 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -0.106 -13.622 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.032 4.032 5 H 0.107 0.893 6 C -0.241 4.241 7 N -0.254 5.254 8 C -0.062 4.062 9 C -0.137 4.137 10 C 0.026 3.974 11 C -0.571 4.571 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.132 4.132 20 C -0.059 4.059 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.003 0.997 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.857 -0.467 -13.449 14.677 hybrid contribution 0.745 0.591 1.281 1.595 sum -5.113 0.124 -12.168 13.199 Atomic orbital electron populations 1.21764 0.95605 1.01630 1.01620 1.21375 0.95566 0.96484 1.01830 1.21679 0.93296 0.97546 1.01948 1.21871 0.95955 0.93433 0.91914 0.89265 1.22420 1.01053 0.98201 1.02385 1.62152 1.10454 1.50634 1.02151 1.22023 0.87681 0.98261 0.98261 1.21544 0.98796 0.98955 0.94449 1.18649 0.92793 0.93544 0.92380 1.21599 1.36527 1.06723 0.92245 0.93215 1.25746 0.95158 0.95842 1.01932 1.70025 1.41489 1.20136 1.24156 0.85637 0.77998 0.79211 0.79295 1.20167 1.20852 1.19371 1.21399 0.98057 0.98214 0.95519 1.22031 0.99165 0.93894 0.90824 0.93650 0.91850 0.92669 0.91815 0.93201 0.92964 0.90081 0.90278 0.93750 0.93261 0.96000 0.89789 0.93185 0.93124 0.99673 0.93136 0.92408 0.95383 0.96766 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.11 -2.73 5.82 30.60 0.18 -2.55 16 3 C -0.11 -2.52 4.50 30.60 0.14 -2.39 16 4 C 0.08 2.01 2.35 44.92 0.11 2.12 16 5 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 6 C -0.18 -4.56 8.50 71.98 0.61 -3.95 16 7 N -0.53 -18.10 4.10 -871.12 -3.57 -21.67 16 8 C 0.07 2.31 5.02 86.33 0.43 2.74 16 9 C -0.10 -4.27 5.32 30.65 0.16 -4.11 16 10 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 11 C -0.53 -30.41 8.56 25.60 0.22 -30.19 16 12 H 0.05 2.80 7.75 -2.91 -0.02 2.77 16 13 C 0.01 0.65 5.31 84.66 0.45 1.10 16 14 N -0.92 -54.34 11.37 21.45 0.24 -54.10 16 15 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C -0.09 -4.61 5.12 30.65 0.16 -4.46 16 20 C 0.07 2.72 4.64 86.32 0.40 3.12 16 21 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.47 7.75 -2.39 -0.02 1.45 16 26 H 0.05 1.38 6.05 -2.39 -0.01 1.37 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.24 6.52 -2.39 -0.02 1.23 16 30 H 0.05 1.29 6.65 -2.39 -0.02 1.28 16 31 H 0.02 0.79 6.73 -2.39 -0.02 0.78 16 32 H 0.08 2.50 8.08 -2.39 -0.02 2.48 16 33 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.06 3.21 6.17 -2.39 -0.01 3.20 16 38 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.01 0.59 6.62 -2.39 -0.02 0.57 16 40 H 0.07 2.64 5.93 -2.39 -0.01 2.62 16 Total: -1.00 -60.67 299.62 3.22 -57.45 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.97 Total: 10.15 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 3.54 Total: -38.55 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -3.32 Total: -75.76 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -60.67 3.22 -57.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397203579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.381 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds