Wall clock time and date at job start Thu Apr 9 2020 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47260 * 185.00718 * 3 2 1 5 5 H 1.08993 * 109.46733 * 55.53375 * 4 3 2 6 6 C 1.53002 * 109.46980 * 175.53439 * 4 3 2 7 7 N 1.46904 * 109.47005 * 295.53255 * 4 3 2 8 8 C 1.46846 * 110.99895 * 298.39902 * 7 4 3 9 9 C 1.53036 * 109.51835 * 174.15995 * 8 7 4 10 10 C 1.53115 * 109.27743 * 59.18561 * 9 8 7 11 11 C 1.53123 * 109.16004 * 302.33764 * 10 9 8 12 12 H 1.09004 * 109.50564 * 297.67994 * 11 10 9 13 13 C 1.50698 * 109.50390 * 177.59589 * 11 10 9 14 14 H 1.08002 * 119.99999 * 240.08006 * 13 11 10 15 15 C 1.37876 * 120.00068 * 60.08472 * 13 11 10 16 16 N 1.31515 * 120.00015 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99865 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.47384 * 270.00110 * 17 15 13 19 19 H 1.48503 * 109.47328 * 30.00014 * 17 15 13 20 20 H 1.48504 * 109.47223 * 150.00482 * 17 15 13 21 21 C 1.46844 * 110.99260 * 174.14936 * 7 4 3 22 22 H 1.08993 * 109.46878 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46806 * 299.99694 * 1 2 3 24 24 H 1.08995 * 109.46891 * 59.99623 * 1 2 3 25 25 H 1.08996 * 109.46980 * 240.00520 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99836 * 2 1 3 27 27 H 1.09006 * 109.46668 * 65.00704 * 3 2 1 28 28 H 1.08999 * 109.47263 * 305.01350 * 3 2 1 29 29 H 1.09004 * 109.46995 * 300.00059 * 6 4 3 30 30 H 1.08996 * 109.47202 * 59.99901 * 6 4 3 31 31 H 1.08995 * 109.46728 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.46159 * 54.15274 * 8 7 4 33 33 H 1.08995 * 109.46841 * 294.17694 * 8 7 4 34 34 H 1.08999 * 109.51171 * 299.24103 * 9 8 7 35 35 H 1.09003 * 109.50378 * 179.12088 * 9 8 7 36 36 H 1.09008 * 109.52487 * 182.43849 * 10 9 8 37 37 H 1.08996 * 109.53112 * 62.24919 * 10 9 8 38 38 H 0.97006 * 119.99607 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.43332 * 65.80667 * 21 7 4 40 40 H 1.09000 * 109.50130 * 305.83986 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1259 5 1 3.8565 0.8881 -1.0167 6 6 4.0656 2.8858 -0.2379 7 7 4.1550 0.8119 1.0614 8 6 3.8139 1.5578 2.2794 9 6 4.3198 0.7941 3.5053 10 6 5.8371 0.6180 3.4005 11 6 6.1689 -0.1189 2.0999 12 1 5.7206 -1.1123 2.1199 13 6 7.6641 -0.2443 1.9600 14 1 8.1656 0.1938 1.1097 15 6 8.3920 -0.9185 2.9175 16 7 9.6968 -1.0283 2.7951 17 14 7.5247 -1.6757 4.3885 18 1 7.4622 -0.6831 5.4912 19 1 6.1471 -2.0722 4.0008 20 1 8.2754 -2.8737 4.8430 21 6 5.6092 0.6704 0.9142 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7518 1.9298 0.9315 28 1 1.6053 1.9817 -0.8417 29 1 3.6277 3.3551 -1.1189 30 1 3.7739 3.4420 0.6529 31 1 5.1518 2.8870 -0.3281 32 1 2.7318 1.6723 2.3441 33 1 4.2817 2.5416 2.2459 34 1 3.8419 -0.1847 3.5472 35 1 4.0802 1.3556 4.4083 36 1 6.1960 0.0369 4.2501 37 1 6.3181 1.5961 3.3979 38 1 10.2089 -1.5023 3.4690 39 1 6.0687 1.6584 0.8863 40 1 5.8313 0.1405 -0.0121 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397565776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:11 Heat of formation + Delta-G solvation = -18.680310 kcal Electronic energy + Delta-G solvation = -16667.355650 eV Core-core repulsion = 14288.120978 eV Total energy + Delta-G solvation = -2379.234673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.11085 -35.72222 -33.27105 -32.17920 -30.26908 -29.45267 -26.66626 -24.90043 -23.67147 -21.60543 -21.40564 -19.62806 -18.49258 -16.70288 -16.02233 -14.92490 -14.38602 -14.21833 -13.95272 -13.75384 -13.51370 -12.98036 -12.78925 -12.51163 -12.24590 -12.10787 -11.89373 -11.62012 -11.22384 -11.08397 -10.93776 -10.65253 -10.62569 -10.29074 -10.21307 -10.01146 -9.87365 -9.61819 -9.03166 -8.87124 -8.47631 -7.66330 -6.03541 -4.02164 3.31218 3.42297 3.46167 4.41503 4.45944 4.86972 5.17950 5.18544 5.28319 5.39545 5.46777 5.50237 5.65878 5.66640 5.70459 5.82186 5.87789 5.97170 6.00702 6.05682 6.09619 6.17058 6.27293 6.30955 6.36368 6.41613 6.50074 6.58941 6.61039 6.68989 6.87656 6.90132 7.26813 7.49839 7.71505 7.73188 7.93565 8.56512 8.99973 9.59762 11.09832 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035989 B = 0.007545 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.838906 B = 3710.342117 C = 3959.259651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.110 4.110 4 C 0.078 3.922 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.532 5.532 8 C 0.058 3.942 9 C -0.119 4.119 10 C -0.122 4.122 11 C 0.020 3.980 12 H 0.034 0.966 13 C -0.513 4.513 14 H 0.071 0.929 15 C 0.070 3.930 16 N -0.904 5.904 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.263 1.263 20 H -0.299 1.299 21 C 0.076 3.924 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.263 0.737 39 H 0.027 0.973 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 5.098 -3.401 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.148 4.148 4 C -0.030 4.030 5 H 0.097 0.903 6 C -0.246 4.246 7 N -0.256 5.256 8 C -0.070 4.070 9 C -0.157 4.157 10 C -0.159 4.159 11 C 0.001 3.999 12 H 0.052 0.948 13 C -0.551 4.551 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.542 5.542 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.188 1.188 20 H -0.227 1.227 21 C -0.050 4.050 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.788 4.551 -3.286 16.756 hybrid contribution 0.131 0.489 0.820 0.964 sum -15.657 5.040 -2.466 16.632 Atomic orbital electron populations 1.21804 0.96917 1.01119 1.01074 1.21416 0.94219 0.96827 1.02996 1.21689 0.94517 0.97236 1.01324 1.21727 0.94194 0.92736 0.94382 0.90350 1.22473 1.02036 0.98531 1.01512 1.62195 1.13079 1.49258 1.01062 1.22046 0.99268 0.95038 0.90627 1.21654 0.98072 1.00143 0.95866 1.22013 0.92912 1.00846 1.00149 1.19158 0.96131 0.94836 0.89799 0.94761 1.21021 0.89717 1.35054 1.09301 0.91042 1.24984 0.94625 0.95553 0.97977 1.69908 1.05781 1.42965 1.35566 0.86821 0.80017 0.78140 0.83126 1.20808 1.18808 1.22688 1.22071 0.84076 0.98731 1.00169 0.93130 0.93191 0.93374 0.92422 0.90681 0.92039 0.92424 0.92808 0.92616 0.92142 0.91653 0.95263 0.91960 0.93049 0.93695 0.92692 0.92752 0.95434 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.40 5.76 -26.73 -0.15 -1.56 16 3 C -0.11 -1.31 4.51 -26.73 -0.12 -1.43 16 4 C 0.08 1.10 2.35 -67.71 -0.16 0.94 16 5 H 0.08 1.12 8.07 -51.93 -0.42 0.71 16 6 C -0.19 -2.47 8.50 37.16 0.32 -2.15 16 7 N -0.53 -9.06 4.16 -226.70 -0.94 -10.00 16 8 C 0.06 0.94 4.63 -3.84 -0.02 0.92 16 9 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 10 C -0.12 -2.67 4.74 -26.61 -0.13 -2.79 16 11 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 12 H 0.03 0.86 7.20 -51.93 -0.37 0.49 16 13 C -0.51 -14.49 9.14 -34.44 -0.31 -14.80 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 17 Si 0.89 22.43 24.35 -169.99 -4.14 18.29 16 18 H -0.28 -6.92 6.89 56.52 0.39 -6.53 16 19 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 C 0.08 1.55 4.27 -3.83 -0.02 1.54 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 27 H 0.06 0.74 6.10 -51.93 -0.32 0.42 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 31 H 0.06 0.88 6.68 -51.93 -0.35 0.54 16 32 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 33 H 0.03 0.48 6.61 -51.93 -0.34 0.13 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 1.05 3.35 -51.92 -0.17 0.87 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 39 H 0.03 0.57 6.75 -51.93 -0.35 0.22 16 40 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 LS Contribution 292.94 15.07 4.41 4.41 Total: -1.00 -29.37 292.94 -7.75 -37.12 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.20 Total: -2.08 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -0.65 Total: -20.55 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.17 Total: -37.19 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.37 -7.75 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.439 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds