Wall clock time and date at job start Thu Apr 9 2020 11:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47260 * 185.00718 * 3 2 1 5 5 H 1.08993 * 109.46733 * 55.53375 * 4 3 2 6 6 C 1.53002 * 109.46980 * 175.53439 * 4 3 2 7 7 N 1.46904 * 109.47005 * 295.53255 * 4 3 2 8 8 C 1.46846 * 110.99895 * 298.39902 * 7 4 3 9 9 C 1.53036 * 109.51835 * 174.15995 * 8 7 4 10 10 C 1.53115 * 109.27743 * 59.18561 * 9 8 7 11 11 C 1.53123 * 109.16004 * 302.33764 * 10 9 8 12 12 H 1.09004 * 109.50564 * 297.67994 * 11 10 9 13 13 C 1.50698 * 109.50390 * 177.59589 * 11 10 9 14 14 H 1.08002 * 119.99999 * 240.08006 * 13 11 10 15 15 C 1.37876 * 120.00068 * 60.08472 * 13 11 10 16 16 N 1.31515 * 120.00015 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99865 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.47384 * 270.00110 * 17 15 13 19 19 H 1.48503 * 109.47328 * 30.00014 * 17 15 13 20 20 H 1.48504 * 109.47223 * 150.00482 * 17 15 13 21 21 C 1.46844 * 110.99260 * 174.14936 * 7 4 3 22 22 H 1.08993 * 109.46878 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46806 * 299.99694 * 1 2 3 24 24 H 1.08995 * 109.46891 * 59.99623 * 1 2 3 25 25 H 1.08996 * 109.46980 * 240.00520 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99836 * 2 1 3 27 27 H 1.09006 * 109.46668 * 65.00704 * 3 2 1 28 28 H 1.08999 * 109.47263 * 305.01350 * 3 2 1 29 29 H 1.09004 * 109.46995 * 300.00059 * 6 4 3 30 30 H 1.08996 * 109.47202 * 59.99901 * 6 4 3 31 31 H 1.08995 * 109.46728 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.46159 * 54.15274 * 8 7 4 33 33 H 1.08995 * 109.46841 * 294.17694 * 8 7 4 34 34 H 1.08999 * 109.51171 * 299.24103 * 9 8 7 35 35 H 1.09003 * 109.50378 * 179.12088 * 9 8 7 36 36 H 1.09008 * 109.52487 * 182.43849 * 10 9 8 37 37 H 1.08996 * 109.53112 * 62.24919 * 10 9 8 38 38 H 0.97006 * 119.99607 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.43332 * 65.80667 * 21 7 4 40 40 H 1.09000 * 109.50130 * 305.83986 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4444 -0.1259 5 1 3.8565 0.8881 -1.0167 6 6 4.0656 2.8858 -0.2379 7 7 4.1550 0.8119 1.0614 8 6 3.8139 1.5578 2.2794 9 6 4.3198 0.7941 3.5053 10 6 5.8371 0.6180 3.4005 11 6 6.1689 -0.1189 2.0999 12 1 5.7206 -1.1123 2.1199 13 6 7.6641 -0.2443 1.9600 14 1 8.1656 0.1938 1.1097 15 6 8.3920 -0.9185 2.9175 16 7 9.6968 -1.0283 2.7951 17 14 7.5247 -1.6757 4.3885 18 1 7.4622 -0.6831 5.4912 19 1 6.1471 -2.0722 4.0008 20 1 8.2754 -2.8737 4.8430 21 6 5.6092 0.6704 0.9142 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7518 1.9298 0.9315 28 1 1.6053 1.9817 -0.8417 29 1 3.6277 3.3551 -1.1189 30 1 3.7739 3.4420 0.6529 31 1 5.1518 2.8870 -0.3281 32 1 2.7318 1.6723 2.3441 33 1 4.2817 2.5416 2.2459 34 1 3.8419 -0.1847 3.5472 35 1 4.0802 1.3556 4.4083 36 1 6.1960 0.0369 4.2501 37 1 6.3181 1.5961 3.3979 38 1 10.2089 -1.5023 3.4690 39 1 6.0687 1.6584 0.8863 40 1 5.8313 0.1405 -0.0121 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397565776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:10 Heat of formation + Delta-G solvation = -36.931716 kcal Electronic energy + Delta-G solvation = -16668.147091 eV Core-core repulsion = 14288.120978 eV Total energy + Delta-G solvation = -2380.026113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49646 -37.12220 -34.83885 -33.79072 -32.00554 -30.76555 -27.65617 -26.79094 -25.14806 -23.20398 -22.38160 -21.12342 -19.97061 -18.77362 -17.43727 -16.50745 -15.86236 -15.57353 -15.24865 -15.07042 -14.99107 -14.73971 -14.08922 -13.88388 -13.64987 -13.53406 -12.98114 -12.89493 -12.77590 -12.62521 -12.27122 -12.14198 -11.86829 -11.66158 -11.61099 -11.43599 -11.34045 -11.29094 -10.99030 -10.70339 -10.59264 -9.03100 -8.30850 -6.34011 1.29084 1.35571 1.47017 2.32492 3.05183 3.09439 3.84583 4.02787 4.14497 4.18371 4.25739 4.33514 4.44477 4.52233 4.54464 4.64790 4.71075 4.72574 4.84498 4.85218 4.94073 4.96224 5.00858 5.08218 5.13847 5.17403 5.18587 5.27165 5.34857 5.40956 5.47338 5.53386 5.65855 5.67854 5.75453 6.21619 6.36667 6.43423 6.73780 7.31739 8.86193 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035989 B = 0.007545 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.838906 B = 3710.342117 C = 3959.259651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.101 4.101 4 C 0.075 3.925 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.536 5.536 8 C 0.059 3.941 9 C -0.114 4.114 10 C -0.121 4.121 11 C 0.020 3.980 12 H 0.023 0.977 13 C -0.519 4.519 14 H 0.031 0.969 15 C 0.013 3.987 16 N -0.951 5.951 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.248 1.248 20 H -0.299 1.299 21 C 0.090 3.910 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.046 0.954 38 H 0.265 0.735 39 H 0.017 0.983 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.999 5.828 -2.682 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.139 4.139 4 C -0.033 4.033 5 H 0.089 0.911 6 C -0.240 4.240 7 N -0.260 5.260 8 C -0.069 4.069 9 C -0.152 4.152 10 C -0.159 4.159 11 C 0.001 3.999 12 H 0.041 0.959 13 C -0.557 4.557 14 H 0.049 0.951 15 C -0.184 4.184 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.172 1.172 20 H -0.227 1.227 21 C -0.038 4.038 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.060 5.297 -2.580 19.951 hybrid contribution 1.187 0.291 0.479 1.313 sum -17.873 5.588 -2.101 18.844 Atomic orbital electron populations 1.21757 0.95194 1.01590 1.01914 1.21384 0.95718 0.96635 1.01690 1.21645 0.92288 0.97405 1.02543 1.21844 0.95785 0.92891 0.92758 0.91065 1.22413 1.00658 0.98084 1.02863 1.62143 1.10308 1.50659 1.02857 1.22113 1.01001 0.94477 0.89260 1.21635 0.94465 1.01032 0.98081 1.21908 0.96300 0.99664 0.98014 1.19070 0.92962 0.95201 0.92677 0.95898 1.21355 0.92410 1.34159 1.07798 0.95089 1.25844 0.95180 0.96195 1.01184 1.70055 1.07585 1.44521 1.37032 0.85783 0.79350 0.77338 0.79587 1.19346 1.17233 1.22706 1.21727 0.86630 0.97381 0.98054 0.92949 0.92613 0.92230 0.93083 0.92733 0.91380 0.90346 0.90524 0.92099 0.94371 0.88612 0.95151 0.91959 0.90155 0.94865 0.93524 0.92590 0.96449 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.77 16 2 C -0.12 -2.50 5.76 30.60 0.18 -2.32 16 3 C -0.10 -2.06 4.51 30.60 0.14 -1.92 16 4 C 0.08 1.97 2.35 44.92 0.11 2.07 16 5 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 6 C -0.18 -4.41 8.50 71.98 0.61 -3.80 16 7 N -0.54 -17.40 4.16 -871.13 -3.62 -21.02 16 8 C 0.06 1.72 4.63 86.33 0.40 2.12 16 9 C -0.11 -3.74 6.09 30.64 0.19 -3.55 16 10 C -0.12 -5.17 4.74 30.67 0.15 -5.02 16 11 C 0.02 0.96 1.85 -11.49 -0.02 0.94 16 12 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 13 C -0.52 -30.43 9.14 25.60 0.23 -30.20 16 14 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 15 C 0.01 0.76 5.45 84.65 0.46 1.22 16 16 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 17 Si 0.95 46.54 24.35 68.60 1.67 48.21 16 18 H -0.27 -12.41 6.89 99.48 0.69 -11.72 16 19 H -0.25 -11.43 6.53 99.48 0.65 -10.78 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 21 C 0.09 3.69 4.27 86.33 0.37 4.06 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.39 7.88 -2.39 -0.02 1.38 16 27 H 0.07 1.32 6.10 -2.38 -0.01 1.31 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.06 1.42 6.51 -2.39 -0.02 1.40 16 31 H 0.04 1.09 6.68 -2.39 -0.02 1.07 16 32 H 0.10 2.28 5.97 -2.39 -0.01 2.26 16 33 H 0.03 0.90 6.61 -2.39 -0.02 0.88 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.48 3.35 -2.38 -0.01 1.47 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 39 H 0.02 0.74 6.75 -2.39 -0.02 0.72 16 40 H 0.05 2.22 8.07 -2.39 -0.02 2.20 16 Total: -1.00 -65.05 292.94 2.77 -62.29 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.90 Total: 9.23 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.52 Total: -38.16 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.32 Total: -81.56 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Total: -65.05 2.77 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397565776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.355 kcal (2) G-P(sol) polarization free energy of solvation -65.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds