Wall clock time and date at job start Thu Apr 9 2020 11:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 H 1.08995 * 109.46540 * 304.99900 * 3 2 1 5 5 C 1.52999 * 109.46844 * 64.99946 * 3 2 1 6 6 C 1.52997 * 109.47243 * 184.99945 * 3 2 1 7 7 N 1.46894 * 109.47180 * 176.77197 * 6 3 2 8 8 C 1.46854 * 110.99945 * 163.94077 * 7 6 3 9 9 C 1.53033 * 109.52262 * 185.84025 * 8 7 6 10 10 C 1.53123 * 109.28158 * 300.82398 * 9 8 7 11 11 C 1.53117 * 109.16137 * 57.65007 * 10 9 8 12 12 H 1.09008 * 109.50138 * 62.33051 * 11 10 9 13 13 C 1.50697 * 109.50132 * 182.40813 * 11 10 9 14 14 H 1.08004 * 119.99489 * 120.00552 * 13 11 10 15 15 C 1.37875 * 120.00341 * 299.99838 * 13 11 10 16 16 N 1.31516 * 119.99659 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00414 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47352 * 59.99822 * 17 15 13 19 19 H 1.48496 * 109.47749 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47000 * 300.00454 * 17 15 13 21 21 C 1.46846 * 111.00298 * 288.15202 * 7 6 3 22 22 H 1.08997 * 109.47212 * 60.00140 * 1 2 3 23 23 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46895 * 300.00308 * 1 2 3 25 25 H 1.09005 * 109.46937 * 119.99806 * 2 1 3 26 26 H 1.08997 * 109.47261 * 239.99487 * 2 1 3 27 27 H 1.08994 * 109.47294 * 54.22974 * 5 3 2 28 28 H 1.09005 * 109.46901 * 174.22803 * 5 3 2 29 29 H 1.09004 * 109.47230 * 294.22365 * 5 3 2 30 30 H 1.08999 * 109.47024 * 296.77731 * 6 3 2 31 31 H 1.09008 * 109.46853 * 56.77121 * 6 3 2 32 32 H 1.08999 * 109.45922 * 305.85555 * 8 7 6 33 33 H 1.08997 * 109.46133 * 65.83731 * 8 7 6 34 34 H 1.09002 * 109.50239 * 60.76116 * 9 8 7 35 35 H 1.08994 * 109.50432 * 180.87916 * 9 8 7 36 36 H 1.08992 * 109.52684 * 177.56250 * 10 9 8 37 37 H 1.09007 * 109.51753 * 297.68737 * 10 9 8 38 38 H 0.97001 * 119.99592 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.46165 * 294.17587 * 21 7 6 40 40 H 1.08999 * 109.45953 * 54.14120 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 7 4.0481 2.8294 -0.2035 8 6 5.4918 2.8984 0.0564 9 6 5.9321 4.3630 0.1113 10 6 5.6014 5.0408 -1.2213 11 6 4.0997 4.9124 -1.4914 12 1 3.5438 5.4301 -0.7095 13 6 3.7750 5.5251 -2.8293 14 1 3.3333 4.9201 -3.6073 15 6 4.0418 6.8580 -3.0603 16 7 4.5800 7.5945 -2.1129 17 14 3.6387 7.6176 -4.7185 18 1 2.1821 7.4929 -4.9792 19 1 4.0196 9.0529 -4.7113 20 1 4.3944 6.9107 -5.7836 21 6 3.7125 3.4319 -1.4999 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.9830 1.5314 2.1516 28 1 2.0846 3.1186 1.3526 29 1 0.5498 2.2171 1.3491 30 1 4.0017 0.9554 0.7450 31 1 3.8556 0.9068 -1.0283 32 1 5.7127 2.4167 1.0089 33 1 6.0293 2.3875 -0.7424 34 1 5.4050 4.8714 0.9187 35 1 7.0063 4.4136 0.2887 36 1 5.8738 6.0949 -1.1714 37 1 6.1593 4.5580 -2.0237 38 1 4.7680 8.5322 -2.2755 39 1 4.2584 2.9183 -2.2913 40 1 2.6412 3.3377 -1.6777 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397589538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:12 Heat of formation + Delta-G solvation = -30.148875 kcal Electronic energy + Delta-G solvation = -16410.606927 eV Core-core repulsion = 14030.874940 eV Total energy + Delta-G solvation = -2379.731987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.51307 -36.11708 -33.36673 -31.59244 -29.81511 -29.18549 -26.10104 -24.91109 -23.61398 -21.68625 -21.12491 -19.40404 -18.52597 -16.33434 -15.28478 -14.89099 -14.59241 -14.41633 -14.00508 -13.21473 -13.17398 -12.76772 -12.58550 -12.28761 -11.99258 -11.81319 -11.70703 -11.48827 -11.10577 -10.90987 -10.71983 -10.62370 -10.38070 -10.28819 -10.27094 -10.04741 -9.75286 -9.38722 -8.95598 -8.64843 -8.26140 -7.55791 -5.93726 -3.99773 3.34205 3.38852 3.41342 4.41775 4.56749 5.04646 5.14071 5.22560 5.36115 5.45833 5.70419 5.71648 5.76008 5.86616 5.89878 5.92630 6.04028 6.11474 6.13893 6.20547 6.27279 6.30478 6.41633 6.49240 6.57727 6.65389 6.76608 6.80194 6.83369 7.05820 7.27441 7.46318 7.75221 7.79942 7.91832 8.13826 8.22431 8.53132 9.04236 9.64231 11.12187 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.007179 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.110135 B = 3899.339545 C = 4537.286757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.136 4.136 6 C 0.060 3.940 7 N -0.536 5.536 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.055 3.945 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.067 3.933 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.016 0.984 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -11.625 5.157 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.091 0.909 5 C -0.194 4.194 6 C -0.068 4.068 7 N -0.261 5.261 8 C -0.064 4.064 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.036 3.964 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.059 4.059 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.883 -11.163 5.557 12.799 hybrid contribution 0.278 -0.074 -1.609 1.635 sum -2.604 -11.237 3.948 12.192 Atomic orbital electron populations 1.21790 0.96055 1.00947 1.02066 1.21559 0.95801 0.96908 1.01359 1.21157 0.95018 0.95083 0.99477 0.90907 1.21723 0.99891 1.01936 0.95817 1.22086 0.95135 0.90173 0.99403 1.61958 1.14043 1.15947 1.34112 1.22009 0.87889 0.97992 0.98518 1.21670 0.98383 0.94386 1.01034 1.21651 0.99069 1.01957 0.92189 1.18651 0.92456 0.88497 0.96759 0.94838 1.21127 1.40833 0.94727 0.98641 0.92989 1.24926 0.95158 0.97161 0.96558 1.69885 1.43341 1.07124 1.32417 0.86706 0.78795 0.78142 0.84606 1.20327 1.21316 1.20423 1.22325 0.99168 0.98131 0.86316 0.92771 0.93339 0.92482 0.92386 0.92522 0.93853 0.90845 0.93714 0.91981 0.95783 0.92610 0.96146 0.92136 0.93673 0.89170 0.95286 0.93049 0.96610 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.12 -1.37 5.40 -26.73 -0.14 -1.52 16 3 C -0.09 -1.26 2.39 -90.62 -0.22 -1.47 16 4 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 5 C -0.14 -1.91 8.75 37.16 0.32 -1.58 16 6 C 0.06 0.94 4.39 -3.83 -0.02 0.92 16 7 N -0.54 -10.03 3.89 -234.68 -0.91 -10.95 16 8 C 0.06 1.15 5.44 -3.83 -0.02 1.13 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 11 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 12 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 13 C -0.51 -14.28 8.56 -34.44 -0.29 -14.58 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -25.59 11.35 55.43 0.63 -24.96 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.07 1.46 4.53 -3.84 -0.02 1.45 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.59 6.70 -51.92 -0.35 0.24 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.21 7.54 -51.93 -0.39 0.82 16 29 H 0.04 0.57 6.85 -51.93 -0.36 0.22 16 30 H 0.06 0.88 7.87 -51.93 -0.41 0.48 16 31 H 0.02 0.38 8.05 -51.92 -0.42 -0.04 16 32 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 37 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.29 6.45 -51.93 -0.33 0.95 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -27.79 303.63 -8.87 -36.66 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.52 Total: -2.44 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.62 Total: -19.33 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.28 Total: -35.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.79 -8.87 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.513 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds