Wall clock time and date at job start Thu Apr 9 2020 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 H 1.08995 * 109.46540 * 304.99900 * 3 2 1 5 5 C 1.52999 * 109.46844 * 64.99946 * 3 2 1 6 6 C 1.52997 * 109.47243 * 184.99945 * 3 2 1 7 7 N 1.46894 * 109.47180 * 176.77197 * 6 3 2 8 8 C 1.46854 * 110.99945 * 163.94077 * 7 6 3 9 9 C 1.53033 * 109.52262 * 185.84025 * 8 7 6 10 10 C 1.53123 * 109.28158 * 300.82398 * 9 8 7 11 11 C 1.53117 * 109.16137 * 57.65007 * 10 9 8 12 12 H 1.09008 * 109.50138 * 62.33051 * 11 10 9 13 13 C 1.50697 * 109.50132 * 182.40813 * 11 10 9 14 14 H 1.08004 * 119.99489 * 120.00552 * 13 11 10 15 15 C 1.37875 * 120.00341 * 299.99838 * 13 11 10 16 16 N 1.31516 * 119.99659 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00414 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47352 * 59.99822 * 17 15 13 19 19 H 1.48496 * 109.47749 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47000 * 300.00454 * 17 15 13 21 21 C 1.46846 * 111.00298 * 288.15202 * 7 6 3 22 22 H 1.08997 * 109.47212 * 60.00140 * 1 2 3 23 23 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46895 * 300.00308 * 1 2 3 25 25 H 1.09005 * 109.46937 * 119.99806 * 2 1 3 26 26 H 1.08997 * 109.47261 * 239.99487 * 2 1 3 27 27 H 1.08994 * 109.47294 * 54.22974 * 5 3 2 28 28 H 1.09005 * 109.46901 * 174.22803 * 5 3 2 29 29 H 1.09004 * 109.47230 * 294.22365 * 5 3 2 30 30 H 1.08999 * 109.47024 * 296.77731 * 6 3 2 31 31 H 1.09008 * 109.46853 * 56.77121 * 6 3 2 32 32 H 1.08999 * 109.45922 * 305.85555 * 8 7 6 33 33 H 1.08997 * 109.46133 * 65.83731 * 8 7 6 34 34 H 1.09002 * 109.50239 * 60.76116 * 9 8 7 35 35 H 1.08994 * 109.50432 * 180.87916 * 9 8 7 36 36 H 1.08992 * 109.52684 * 177.56250 * 10 9 8 37 37 H 1.09007 * 109.51753 * 297.68737 * 10 9 8 38 38 H 0.97001 * 119.99592 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.46165 * 294.17587 * 21 7 6 40 40 H 1.08999 * 109.45953 * 54.14120 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 7 4.0481 2.8294 -0.2035 8 6 5.4918 2.8984 0.0564 9 6 5.9321 4.3630 0.1113 10 6 5.6014 5.0408 -1.2213 11 6 4.0997 4.9124 -1.4914 12 1 3.5438 5.4301 -0.7095 13 6 3.7750 5.5251 -2.8293 14 1 3.3333 4.9201 -3.6073 15 6 4.0418 6.8580 -3.0603 16 7 4.5800 7.5945 -2.1129 17 14 3.6387 7.6176 -4.7185 18 1 2.1821 7.4929 -4.9792 19 1 4.0196 9.0529 -4.7113 20 1 4.3944 6.9107 -5.7836 21 6 3.7125 3.4319 -1.4999 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.9830 1.5314 2.1516 28 1 2.0846 3.1186 1.3526 29 1 0.5498 2.2171 1.3491 30 1 4.0017 0.9554 0.7450 31 1 3.8556 0.9068 -1.0283 32 1 5.7127 2.4167 1.0089 33 1 6.0293 2.3875 -0.7424 34 1 5.4050 4.8714 0.9187 35 1 7.0063 4.4136 0.2887 36 1 5.8738 6.0949 -1.1714 37 1 6.1593 4.5580 -2.0237 38 1 4.7680 8.5322 -2.2755 39 1 4.2584 2.9183 -2.2913 40 1 2.6412 3.3377 -1.6777 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397589538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:11 Heat of formation + Delta-G solvation = -44.948307 kcal Electronic energy + Delta-G solvation = -16411.248678 eV Core-core repulsion = 14030.874940 eV Total energy + Delta-G solvation = -2380.373739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04275 -37.42565 -35.21041 -33.22708 -31.68172 -30.31666 -27.38302 -26.93037 -24.92616 -23.25151 -22.70415 -20.57240 -20.30396 -18.40996 -16.90236 -16.34065 -16.11006 -15.75643 -15.40901 -14.91381 -14.51478 -14.37077 -14.10343 -13.91216 -13.39364 -13.20419 -12.84911 -12.82796 -12.73842 -12.59393 -12.50778 -12.13886 -11.81836 -11.77653 -11.47248 -11.41984 -11.39582 -11.21710 -10.82096 -10.59766 -10.37028 -9.06630 -8.07859 -6.22243 1.40655 1.42009 1.49733 2.42558 3.12472 3.18742 3.91684 4.09242 4.16555 4.26520 4.30819 4.38844 4.52081 4.59355 4.66702 4.72623 4.77520 4.82812 4.89145 4.93246 4.95201 5.04178 5.12849 5.18125 5.19548 5.23693 5.29766 5.36766 5.40980 5.53676 5.59128 5.63363 5.67842 5.98359 6.14723 6.23004 6.43528 6.48122 6.90420 7.45492 8.96586 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.007179 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.110135 B = 3899.339545 C = 4537.286757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.048 0.952 5 C -0.131 4.131 6 C 0.061 3.939 7 N -0.544 5.544 8 C 0.066 3.934 9 C -0.110 4.110 10 C -0.104 4.104 11 C 0.053 3.947 12 H -0.004 1.004 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.085 3.915 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.008 0.992 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -13.436 5.492 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.066 0.934 5 C -0.188 4.188 6 C -0.066 4.066 7 N -0.269 5.269 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.035 3.965 12 H 0.014 0.986 13 C -0.577 4.577 14 H 0.067 0.933 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.043 4.043 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.949 -12.991 5.898 14.568 hybrid contribution 0.290 0.495 -1.679 1.774 sum -2.660 -12.495 4.219 13.454 Atomic orbital electron populations 1.21786 0.95343 1.01964 1.01718 1.21506 0.96390 0.94850 1.02231 1.21148 0.94173 0.96763 0.98570 0.93378 1.21656 1.00310 1.00482 0.96378 1.22195 0.95956 0.88087 1.00411 1.61911 1.14804 1.18229 1.31910 1.22037 0.87295 0.96511 1.00334 1.21580 0.99886 0.95449 0.97870 1.21463 0.97945 1.00376 0.94464 1.18572 0.92905 0.90543 0.94520 0.98628 1.21503 1.41131 0.95407 0.99669 0.93282 1.25712 0.94948 0.97625 1.00111 1.70031 1.43912 1.07277 1.34223 0.85691 0.78778 0.77345 0.80316 1.19685 1.20766 1.19710 1.21949 0.98647 0.95830 0.87862 0.93689 0.91640 0.92324 0.90841 0.92268 0.92107 0.93833 0.92873 0.89665 0.95682 0.89244 0.95865 0.93116 0.91259 0.92417 0.96127 0.93043 0.97358 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.67 71.98 0.70 -2.16 16 2 C -0.11 -2.31 5.40 30.60 0.17 -2.14 16 3 C -0.09 -2.36 2.39 -10.79 -0.03 -2.38 16 4 H 0.05 1.53 6.54 -2.39 -0.02 1.51 16 5 C -0.13 -3.48 8.75 71.98 0.63 -2.85 16 6 C 0.06 1.76 4.39 86.30 0.38 2.14 16 7 N -0.54 -19.86 3.89 -896.38 -3.49 -23.35 16 8 C 0.07 2.24 5.44 86.32 0.47 2.71 16 9 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 10 C -0.10 -5.15 5.02 30.67 0.15 -4.99 16 11 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 12 H 0.00 -0.27 8.14 -2.38 -0.02 -0.28 16 13 C -0.54 -30.74 8.56 25.60 0.22 -30.52 16 14 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 15 C 0.01 0.84 5.30 84.65 0.45 1.29 16 16 N -0.92 -54.17 11.35 21.45 0.24 -53.92 16 17 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.08 3.73 4.53 86.33 0.39 4.12 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.08 6.70 -2.38 -0.02 1.07 16 25 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.41 7.54 -2.38 -0.02 1.39 16 29 H 0.05 1.29 6.85 -2.38 -0.02 1.28 16 30 H 0.08 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.02 0.73 8.05 -2.38 -0.02 0.71 16 32 H 0.09 2.50 7.96 -2.39 -0.02 2.48 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 3.21 6.15 -2.39 -0.01 3.20 16 37 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.05 2.42 6.45 -2.39 -0.02 2.41 16 Total: -1.00 -60.99 303.63 3.43 -57.56 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.96 Total: 9.31 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.69 Total: -36.13 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.25 Total: -77.27 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.99 3.43 -57.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397589538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.612 kcal (2) G-P(sol) polarization free energy of solvation -60.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds