Wall clock time and date at job start Thu Apr 9 2020 11:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.46604 * 2 1 4 4 C 1.54386 * 110.40965 * 237.58761 * 2 1 3 5 5 H 1.08999 * 110.32655 * 336.26384 * 4 2 1 6 6 C 1.53001 * 110.32570 * 98.47430 * 4 2 1 7 7 C 1.54258 * 105.05927 * 217.37013 * 4 2 1 8 8 H 1.09010 * 110.32260 * 241.10555 * 7 4 2 9 9 C 1.53002 * 110.32586 * 118.89952 * 7 4 2 10 10 C 1.54378 * 105.06378 * 359.97438 * 7 4 2 11 11 N 1.48558 * 110.41226 * 122.41827 * 2 1 3 12 12 C 1.46902 * 110.99666 * 277.81436 * 11 2 1 13 13 C 1.52998 * 109.47246 * 309.16247 * 12 11 2 14 14 C 1.53002 * 109.46595 * 185.51945 * 13 12 11 15 15 C 1.50701 * 109.46593 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00634 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00082 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99609 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00202 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47463 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47496 * 119.99460 * 19 17 15 22 22 H 1.48505 * 109.47301 * 239.99674 * 19 17 15 23 23 H 1.09001 * 109.47212 * 299.03878 * 1 2 3 24 24 H 1.09004 * 109.47039 * 59.03921 * 1 2 3 25 25 H 1.09004 * 109.47506 * 179.03685 * 1 2 3 26 26 H 1.08994 * 109.47633 * 177.08990 * 6 4 2 27 27 H 1.09000 * 109.46904 * 297.09126 * 6 4 2 28 28 H 1.09004 * 109.46915 * 57.08887 * 6 4 2 29 29 H 1.09006 * 109.46675 * 302.90747 * 9 7 4 30 30 H 1.08993 * 109.47260 * 62.90561 * 9 7 4 31 31 H 1.08996 * 109.47101 * 182.90993 * 9 7 4 32 32 H 1.09001 * 110.41462 * 265.07560 * 10 7 4 33 33 H 1.08998 * 110.51421 * 142.68238 * 10 7 4 34 34 H 1.09004 * 109.46897 * 189.15432 * 12 11 2 35 35 H 1.09003 * 109.46575 * 69.16404 * 12 11 2 36 36 H 1.08999 * 109.47246 * 65.52077 * 13 12 11 37 37 H 1.09002 * 109.46920 * 305.51234 * 13 12 11 38 38 H 1.08998 * 109.47694 * 60.00324 * 14 13 12 39 39 H 1.09002 * 109.46906 * 299.99298 * 14 13 12 40 40 H 0.97005 * 120.00108 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0211 0.0000 4 6 2.0684 -0.7756 -1.2215 5 1 1.3235 -1.4880 -1.5760 6 6 2.4519 0.1950 -2.3404 7 6 3.3176 -1.5189 -0.7055 8 1 4.2041 -1.1923 -1.2493 9 6 3.1328 -3.0311 -0.8476 10 6 3.4294 -1.1295 0.7842 11 7 2.0481 -0.7464 1.1753 12 6 2.0569 0.1013 2.3751 13 6 2.7602 1.4231 2.0605 14 6 2.8917 2.2483 3.3421 15 6 3.5839 3.5506 3.0322 16 1 3.8989 3.7677 2.0222 17 6 3.8160 4.4645 4.0382 18 7 3.4328 4.1999 5.2681 19 14 4.6746 6.0783 3.6541 20 1 5.0022 6.1327 2.2067 21 1 3.7791 7.2106 4.0021 22 1 5.9258 6.1747 4.4482 23 1 -0.3634 0.4988 0.8985 24 1 -0.3633 0.5287 -0.8813 25 1 -0.3634 -1.0275 -0.0173 26 1 2.8777 -0.3623 -3.1748 27 1 1.5642 0.7308 -2.6767 28 1 3.1869 0.9079 -1.9668 29 1 2.2364 -3.3396 -0.3097 30 1 3.0300 -3.2870 -1.9021 31 1 4.0003 -3.5437 -0.4322 32 1 4.1078 -0.2851 0.9066 33 1 3.7701 -1.9787 1.3765 34 1 2.5876 -0.4108 3.1778 35 1 1.0315 0.3004 2.6867 36 1 2.1761 1.9801 1.3280 37 1 3.7518 1.2197 1.6560 38 1 3.4758 1.6914 4.0747 39 1 1.9001 2.4517 3.7466 40 1 3.5957 4.8430 5.9758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399683591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:23 Heat of formation + Delta-G solvation = -42.595157 kcal Electronic energy + Delta-G solvation = -16269.690357 eV Core-core repulsion = 13889.418659 eV Total energy + Delta-G solvation = -2380.271698 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84385 -36.55340 -34.89049 -33.20900 -32.44247 -29.84375 -28.42368 -26.31490 -25.09860 -23.80487 -22.76369 -20.78309 -20.23309 -18.52542 -16.94949 -16.43096 -16.12633 -15.70694 -15.51738 -14.70083 -14.55409 -14.28524 -14.06713 -13.75495 -13.65501 -13.28412 -13.12112 -12.81901 -12.76516 -12.65898 -12.46142 -12.36492 -12.10683 -11.85676 -11.64136 -11.41606 -11.38430 -11.29632 -11.20725 -11.02865 -10.58113 -9.26762 -8.23032 -6.35387 1.36607 1.36893 1.50239 2.37571 3.09065 3.12930 3.63785 3.70572 3.99313 4.10309 4.32191 4.33517 4.46085 4.52382 4.56983 4.62087 4.65903 4.68397 4.76672 4.82233 4.90446 4.97435 5.02540 5.10175 5.17188 5.20143 5.23470 5.24818 5.29983 5.41831 5.42333 5.49369 5.55372 5.68062 5.80441 6.03418 6.12312 6.22040 6.80924 7.34071 8.88344 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.005851 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.491731 B = 4784.010758 C = 4904.758831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.043 3.957 3 H 0.046 0.954 4 C -0.082 4.082 5 H 0.089 0.911 6 C -0.142 4.142 7 C -0.090 4.090 8 H 0.078 0.922 9 C -0.131 4.131 10 C 0.024 3.976 11 N -0.504 5.504 12 C 0.052 3.948 13 C -0.125 4.125 14 C 0.029 3.971 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.048 0.952 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -11.554 -14.575 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 H 0.064 0.936 4 C -0.101 4.101 5 H 0.107 0.893 6 C -0.199 4.199 7 C -0.109 4.109 8 H 0.097 0.903 9 C -0.188 4.188 10 C -0.104 4.104 11 N -0.226 5.226 12 C -0.077 4.077 13 C -0.164 4.164 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.073 0.927 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.714 -11.975 -14.270 18.826 hybrid contribution 0.937 1.830 0.493 2.114 sum -1.777 -10.145 -13.777 17.202 Atomic orbital electron populations 1.21647 0.93381 1.02302 1.01371 1.22964 0.96646 0.96330 0.90528 0.93573 1.22014 0.97086 0.97028 0.93982 0.89253 1.21847 1.01388 0.98777 0.97930 1.21973 0.98060 0.97086 0.93796 0.90323 1.21737 1.01813 0.93331 1.01962 1.23299 0.90274 0.99781 0.97025 1.65662 1.17998 1.36105 1.02853 1.22171 1.00360 0.91648 0.93499 1.21996 0.99283 0.96579 0.98512 1.18922 0.94847 0.94007 0.93105 1.21687 1.38309 1.03390 0.94780 0.92698 1.25987 0.96484 1.02496 0.94791 1.70102 1.48351 1.37361 1.01432 0.85402 0.78246 0.78763 0.78667 1.18773 1.20117 1.20161 0.94145 0.91133 0.91520 0.90931 0.92047 0.94024 0.92827 0.91523 0.92433 0.94819 0.90144 0.91739 0.91352 0.93081 0.93379 0.99138 0.99033 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.35 71.98 0.67 -2.56 16 2 C 0.04 1.21 2.20 45.06 0.10 1.31 16 3 H 0.05 1.51 5.10 -2.39 -0.01 1.50 16 4 C -0.08 -1.81 2.86 -9.90 -0.03 -1.84 16 5 H 0.09 1.78 7.41 -2.39 -0.02 1.76 16 6 C -0.14 -2.81 8.91 71.98 0.64 -2.17 16 7 C -0.09 -2.00 3.30 -9.90 -0.03 -2.03 16 8 H 0.08 1.65 7.71 -2.38 -0.02 1.63 16 9 C -0.13 -2.39 8.90 71.98 0.64 -1.75 16 10 C 0.02 0.68 5.89 86.44 0.51 1.19 16 11 N -0.50 -15.52 5.33 -856.64 -4.57 -20.09 16 12 C 0.05 1.91 5.38 86.30 0.46 2.37 16 13 C -0.13 -5.39 4.27 30.59 0.13 -5.26 16 14 C 0.03 1.58 4.97 29.85 0.15 1.73 16 15 C -0.54 -31.93 9.11 25.60 0.23 -31.69 16 16 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 17 C 0.00 0.01 5.46 84.66 0.46 0.48 16 18 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 19 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H 0.04 1.12 7.66 -2.39 -0.02 1.10 16 24 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.07 1.53 8.12 -2.38 -0.02 1.51 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.94 8.12 -2.38 -0.02 0.92 16 29 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.03 1.09 5.84 -2.39 -0.01 1.07 16 33 H 0.08 2.17 7.87 -2.39 -0.02 2.15 16 34 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.07 2.53 7.69 -2.39 -0.02 2.51 16 36 H 0.05 2.20 6.25 -2.39 -0.01 2.18 16 37 H 0.05 2.07 6.02 -2.39 -0.01 2.06 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -63.99 307.19 2.65 -61.33 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.97 Total: 9.41 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 3.94 Total: -40.23 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -4.28 Total: -77.58 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.99 2.65 -61.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399683591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.740 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds