Wall clock time and date at job start Thu Apr 9 2020 11:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.28668 * 2 1 4 4 C 1.54383 * 110.32380 * 237.87252 * 2 1 3 5 5 N 1.48562 * 104.59208 * 217.24778 * 4 2 1 6 6 C 1.46904 * 110.99670 * 159.03990 * 5 4 2 7 7 C 1.52994 * 109.47264 * 69.87469 * 6 5 4 8 8 C 1.53001 * 109.47367 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46995 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72153 * 9 8 7 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00035 * 179.72339 * 11 9 8 13 13 Si 1.86803 * 119.99853 * 359.72191 * 11 9 8 14 14 H 1.48500 * 109.46986 * 90.00256 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00273 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00102 * 13 11 9 17 17 C 1.48565 * 104.22266 * 39.48295 * 5 4 2 18 18 H 1.09003 * 110.41031 * 79.29357 * 17 5 4 19 19 C 1.52991 * 110.41204 * 201.73526 * 17 5 4 20 20 C 1.54260 * 110.32640 * 122.23360 * 2 1 3 21 21 H 1.08998 * 110.32442 * 359.89511 * 20 2 1 22 22 C 1.52999 * 110.32272 * 237.79216 * 20 2 1 23 23 H 1.08998 * 109.46976 * 180.68027 * 1 2 3 24 24 H 1.08997 * 109.47283 * 300.67646 * 1 2 3 25 25 H 1.09004 * 109.47350 * 60.67539 * 1 2 3 26 26 H 1.08998 * 110.41057 * 98.47196 * 4 2 1 27 27 H 1.08996 * 110.41226 * 336.02872 * 4 2 1 28 28 H 1.08998 * 109.47046 * 309.87146 * 6 5 4 29 29 H 1.09001 * 109.47014 * 189.87347 * 6 5 4 30 30 H 1.08998 * 109.47353 * 59.99865 * 7 6 5 31 31 H 1.09006 * 109.47395 * 300.00120 * 7 6 5 32 32 H 1.08998 * 109.47065 * 59.99602 * 8 7 6 33 33 H 1.09001 * 109.46892 * 299.99866 * 8 7 6 34 34 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.47465 * 58.54555 * 19 17 5 36 36 H 1.09003 * 109.47612 * 178.54747 * 19 17 5 37 37 H 1.09004 * 109.47289 * 298.54432 * 19 17 5 38 38 H 1.09004 * 109.47346 * 61.45784 * 22 20 2 39 39 H 1.09002 * 109.46856 * 181.45077 * 22 20 2 40 40 H 1.08996 * 109.47659 * 301.44873 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7699 -1.2260 5 7 3.2694 -1.4821 -0.7239 6 6 3.6068 -2.6202 -1.5893 7 6 4.1268 -2.1032 -2.9321 8 6 4.4777 -3.2885 -3.8337 9 6 4.9904 -2.7792 -5.1561 10 1 5.0549 -1.7166 -5.3372 11 6 5.3723 -3.6701 -6.1367 12 7 5.8146 -3.2258 -7.2928 13 14 5.2614 -5.5083 -5.8231 14 1 3.9253 -6.0023 -6.2427 15 1 6.3147 -6.2077 -6.6019 16 1 5.4560 -5.7762 -4.3755 17 6 2.8807 -1.9427 0.6341 18 1 2.2648 -2.8398 0.5694 19 6 4.1248 -2.2082 1.4839 20 6 2.0658 -0.7715 1.2236 21 1 1.2388 -1.1487 1.8252 22 6 2.9675 0.1312 2.0679 23 1 -0.3633 -1.0276 0.0122 24 1 -0.3634 0.5243 0.8838 25 1 -0.3634 0.5033 -0.8960 26 1 2.3393 -0.0760 -2.0210 27 1 1.3229 -1.4834 -1.5818 28 1 2.7171 -3.2279 -1.7538 29 1 4.3766 -3.2252 -1.1102 30 1 5.0166 -1.4955 -2.7676 31 1 3.3571 -1.4981 -3.4112 32 1 3.5877 -3.8959 -3.9981 33 1 5.2473 -3.8939 -3.3548 34 1 6.0836 -3.8526 -7.9825 35 1 4.7196 -1.2973 1.5519 36 1 3.8223 -2.5201 2.4836 37 1 4.7191 -2.9965 1.0217 38 1 2.3906 0.9804 2.4345 39 1 3.3585 -0.4345 2.9135 40 1 3.7956 0.4910 1.4574 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399683594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:29 Heat of formation + Delta-G solvation = -42.680017 kcal Electronic energy + Delta-G solvation = -16039.609567 eV Core-core repulsion = 13659.334189 eV Total energy + Delta-G solvation = -2380.275378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70980 -36.60670 -34.83424 -33.63382 -32.82820 -29.31124 -28.77828 -26.20283 -25.58879 -23.52129 -21.95906 -21.24733 -19.95251 -18.91015 -16.86573 -16.49005 -16.18198 -16.13174 -15.22995 -15.07319 -14.77749 -14.32605 -14.13704 -13.75104 -13.68827 -13.29553 -13.16929 -12.92690 -12.65978 -12.48223 -12.31263 -12.24866 -11.98184 -11.80645 -11.58045 -11.45639 -11.33609 -11.29071 -11.26335 -11.11796 -10.77761 -9.39158 -8.30741 -6.35238 1.34215 1.36676 1.49082 2.35297 3.03571 3.04369 3.61908 3.67914 3.96407 4.15690 4.21747 4.32119 4.40902 4.48253 4.59151 4.64512 4.65375 4.72238 4.75800 4.85214 4.86464 4.87405 4.94466 5.01648 5.07863 5.11708 5.21669 5.24301 5.32660 5.36137 5.47721 5.50010 5.54185 5.58684 5.64812 6.04805 6.14622 6.29252 6.72649 7.29313 8.86464 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.005427 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.791955 B = 5158.141706 C = 5435.728312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.033 3.967 5 N -0.517 5.517 6 C 0.056 3.944 7 C -0.084 4.084 8 C -0.009 4.009 9 C -0.534 4.534 10 H 0.028 0.972 11 C 0.003 3.997 12 N -0.953 5.953 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.246 1.246 17 C 0.055 3.945 18 H 0.045 0.955 19 C -0.135 4.135 20 C -0.083 4.083 21 H 0.088 0.912 22 C -0.136 4.136 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 2.823 21.260 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.095 4.095 5 N -0.241 5.241 6 C -0.072 4.072 7 C -0.122 4.122 8 C -0.047 4.047 9 C -0.572 4.572 10 H 0.046 0.954 11 C -0.194 4.194 12 N -0.593 5.593 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.170 1.170 17 C -0.053 4.053 18 H 0.063 0.937 19 C -0.192 4.192 20 C -0.102 4.102 21 H 0.106 0.894 22 C -0.193 4.193 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.499 3.114 21.114 23.361 hybrid contribution -0.388 -1.122 -0.982 1.541 sum -9.888 1.992 20.132 22.517 Atomic orbital electron populations 1.21821 0.93507 1.01877 1.02455 1.21982 0.96267 0.99398 0.93262 0.90313 1.23213 0.90927 0.97366 0.98036 1.65342 1.33510 1.22857 1.02379 1.22210 0.99379 0.92299 0.93357 1.21211 0.99581 0.97752 0.93650 1.19489 0.95934 0.95551 0.93715 1.21493 1.42847 0.93554 0.99338 0.95394 1.26067 0.94074 1.04834 0.94401 1.70078 1.45843 1.36974 1.06450 0.85600 0.78452 0.78550 0.79695 1.19050 1.20733 1.16983 1.22778 0.96543 0.96733 0.89227 0.93699 1.21794 0.96650 1.01763 0.99036 1.21978 0.97701 0.94662 0.95848 0.89381 1.21839 0.99161 0.99057 0.99224 0.92898 0.90965 0.92589 0.91709 0.94291 0.95011 0.90826 0.93542 0.93970 0.96511 0.96117 0.92438 0.91640 0.90497 0.93955 0.92043 0.91481 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.90 71.98 0.64 -1.67 16 2 C -0.09 -1.85 3.30 -9.90 -0.03 -1.88 16 3 H 0.08 1.63 7.72 -2.38 -0.02 1.61 16 4 C 0.03 0.89 5.28 86.45 0.46 1.34 16 5 N -0.52 -15.17 5.05 -856.72 -4.33 -19.50 16 6 C 0.06 1.88 4.75 86.30 0.41 2.29 16 7 C -0.08 -3.53 5.21 30.59 0.16 -3.37 16 8 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 9 C -0.53 -32.25 9.66 25.60 0.25 -32.01 16 10 H 0.03 1.86 7.99 -2.92 -0.02 1.84 16 11 C 0.00 0.16 5.47 84.66 0.46 0.63 16 12 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 13 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 17 C 0.06 1.28 2.80 45.06 0.13 1.40 16 18 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 19 C -0.14 -2.80 8.24 71.98 0.59 -2.21 16 20 C -0.08 -1.55 3.22 -9.90 -0.03 -1.58 16 21 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 22 C -0.14 -2.25 7.69 71.98 0.55 -1.70 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 1.95 7.76 -2.39 -0.02 1.93 16 27 H 0.04 1.08 7.54 -2.39 -0.02 1.06 16 28 H 0.03 1.04 7.88 -2.39 -0.02 1.03 16 29 H 0.07 2.41 7.28 -2.39 -0.02 2.39 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.81 7.26 -2.38 -0.02 1.80 16 32 H 0.02 0.79 7.58 -2.39 -0.02 0.77 16 33 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 34 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.06 1.40 6.39 -2.39 -0.02 1.38 16 36 H 0.08 1.23 7.89 -2.39 -0.02 1.21 16 37 H 0.04 0.96 7.36 -2.38 -0.02 0.95 16 38 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.07 0.96 6.93 -2.39 -0.02 0.94 16 40 H 0.05 0.96 7.54 -2.39 -0.02 0.95 16 Total: -1.00 -66.82 304.81 2.47 -64.35 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.91 Total: 8.15 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.71 Total: -39.07 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -4.03 Total: -80.63 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -66.82 2.47 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399683594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.671 kcal (2) G-P(sol) polarization free energy of solvation -66.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds