Wall clock time and date at job start Thu Apr 9 2020 11:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47115 * 2 1 4 4 C 1.53001 * 109.47425 * 240.00025 * 2 1 3 5 5 C 1.52997 * 109.47425 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46927 * 60.00078 * 5 4 2 7 7 H 1.08997 * 109.47571 * 59.99813 * 6 5 4 8 8 C 1.52999 * 109.46984 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.46983 * 299.99939 * 6 5 4 10 10 H 1.08998 * 109.46717 * 179.97438 * 9 6 5 11 11 N 1.46897 * 109.47333 * 300.00089 * 9 6 5 12 12 C 1.46893 * 111.00104 * 205.00414 * 11 9 6 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.52999 * 109.46897 * 60.00392 * 9 6 5 23 23 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47406 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.47037 * 60.00134 * 1 2 3 26 26 H 1.09001 * 109.47142 * 59.99906 * 4 2 1 27 27 H 1.08999 * 109.47327 * 300.00261 * 4 2 1 28 28 H 1.08999 * 109.47081 * 300.00412 * 5 4 2 29 29 H 1.09000 * 109.47406 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.47094 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47064 * 299.99730 * 8 6 5 32 32 H 1.08999 * 109.47367 * 60.00124 * 8 6 5 33 33 H 1.00908 * 111.00037 * 328.95437 * 11 9 6 34 34 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 35 35 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 36 36 H 1.09000 * 109.47211 * 59.98987 * 13 12 11 37 37 H 1.09007 * 109.46376 * 299.99529 * 13 12 11 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47367 * 59.99483 * 22 9 6 40 40 H 1.09000 * 109.47064 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0003 7 1 3.7175 -2.4693 0.0000 8 6 5.6105 -1.4405 -0.0003 9 6 3.5704 -0.7203 1.2490 10 1 3.9338 -1.2342 2.1389 11 7 4.0596 0.6649 1.2487 12 6 4.1225 1.2012 2.6148 13 6 4.6345 2.6425 2.5738 14 6 4.6985 3.1929 3.9752 15 1 4.4030 2.5765 4.8114 16 6 5.1282 4.4853 4.1892 17 7 5.4877 5.2360 3.1709 18 14 5.2001 5.1702 5.9257 19 1 6.5359 4.8929 6.5123 20 1 4.9704 6.6369 5.8892 21 1 4.1513 4.5254 6.7559 22 6 2.0404 -0.7209 1.2492 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2074 -2.1392 27 1 1.6767 -1.7489 -1.2493 28 1 3.9330 0.3071 -1.2497 29 1 3.9334 -1.2349 -2.1393 30 1 5.9742 -1.9537 0.8899 31 1 5.9742 -1.9541 -0.8903 32 1 5.9731 -0.4126 -0.0002 33 1 4.9572 0.7313 0.7925 34 1 4.7992 0.5917 3.2137 35 1 3.1271 1.1822 3.0588 36 1 3.9575 3.2517 1.9750 37 1 5.6298 2.6618 2.1297 38 1 5.7897 6.1453 3.3215 39 1 1.6775 -1.7487 1.2494 40 1 1.6771 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590647663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:47 Heat of formation + Delta-G solvation = -41.543927 kcal Electronic energy + Delta-G solvation = -16239.733537 eV Core-core repulsion = 13859.507424 eV Total energy + Delta-G solvation = -2380.226114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32442 -35.00257 -33.58480 -32.51437 -30.14884 -28.59182 -27.60266 -24.31183 -23.76076 -22.02915 -20.76612 -20.07171 -18.68112 -16.23356 -15.64487 -15.00170 -14.50954 -14.22142 -14.18122 -13.81549 -13.34139 -12.85866 -12.64322 -12.31175 -12.18011 -11.84680 -11.79840 -11.47152 -11.28392 -11.05421 -10.92748 -10.83876 -10.60096 -10.42968 -10.20003 -10.09666 -9.84796 -9.59724 -9.27111 -9.09755 -8.32441 -7.66223 -5.97193 -3.99444 3.33362 3.39539 3.43086 4.46087 4.75608 4.85484 4.92542 5.10031 5.24423 5.28759 5.38756 5.49386 5.61312 5.69925 5.73114 5.79305 5.81778 5.94177 6.01473 6.05588 6.12302 6.14638 6.20852 6.29537 6.37138 6.41497 6.48242 6.56178 6.61441 6.64842 6.89008 7.06267 7.59016 7.79080 7.89224 8.06096 8.14915 8.48046 9.08090 9.64198 11.14250 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.005960 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.092847 B = 4696.913266 C = 5072.840223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.090 0.910 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.091 4.091 7 H 0.066 0.934 8 C -0.153 4.153 9 C 0.089 3.911 10 H 0.035 0.965 11 N -0.682 5.682 12 C 0.067 3.933 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.098 4.098 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.335 0.665 34 H 0.012 0.988 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.012 0.988 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -13.375 -7.943 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.108 0.892 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.110 4.110 7 H 0.085 0.915 8 C -0.211 4.211 9 C -0.021 4.021 10 H 0.053 0.947 11 N -0.316 5.316 12 C -0.062 4.062 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.136 4.136 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.716 -12.927 -8.113 16.298 hybrid contribution 0.871 -0.030 1.386 1.637 sum -4.845 -12.957 -6.727 15.382 Atomic orbital electron populations 1.21847 0.96417 1.00794 1.01349 1.21014 0.93862 1.01544 0.93973 0.89208 1.21519 0.95545 0.99668 0.97786 1.21499 0.95553 1.01519 0.96042 1.21272 0.95110 0.98988 0.95628 0.91524 1.21904 0.95659 1.02174 1.01339 1.21481 0.95254 0.89756 0.95599 0.94700 1.60661 1.33164 1.17541 1.20204 1.22170 0.99348 0.98199 0.86445 1.19051 0.96097 0.89138 0.96809 1.21193 1.43863 0.97912 0.92950 0.92852 1.24996 0.95478 0.97056 0.96822 1.69971 1.44688 1.08641 1.30012 0.86606 0.78323 0.78169 0.84958 1.20733 1.21205 1.19912 1.21531 0.94763 0.99052 0.98290 0.93560 0.92864 0.93201 0.92626 0.93064 0.90687 0.93053 0.92973 0.92737 0.92050 0.84478 0.96997 0.92518 0.95713 0.97011 0.93038 0.93010 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.19 37.16 0.34 -1.40 16 2 C -0.09 -1.15 2.56 -90.62 -0.23 -1.38 16 3 H 0.09 1.46 7.60 -51.93 -0.39 1.06 16 4 C -0.11 -1.28 5.20 -26.73 -0.14 -1.41 16 5 C -0.11 -1.32 5.04 -26.73 -0.13 -1.45 16 6 C -0.09 -1.13 2.49 -90.62 -0.23 -1.35 16 7 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.15 -1.82 8.96 37.16 0.33 -1.49 16 9 C 0.09 1.32 2.30 -67.71 -0.16 1.17 16 10 H 0.04 0.54 7.80 -51.93 -0.41 0.14 16 11 N -0.68 -12.06 4.82 -106.72 -0.51 -12.57 16 12 C 0.07 1.42 5.42 -3.83 -0.02 1.40 16 13 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 14 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.10 -1.38 4.81 -26.73 -0.13 -1.51 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.03 7.48 -51.93 -0.39 0.65 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 33 H 0.33 5.83 6.01 -39.29 -0.24 5.60 16 34 H 0.01 0.25 8.06 -51.93 -0.42 -0.16 16 35 H 0.06 1.23 7.44 -51.93 -0.39 0.84 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.94 7.45 -51.93 -0.39 0.56 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -29.30 306.56 -8.65 -37.95 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.55 Total: 0.18 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.92 Total: -20.59 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.22 Total: -39.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.30 -8.65 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.594 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds