Wall clock time and date at job start Thu Apr 9 2020 11:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47115 * 2 1 4 4 C 1.53001 * 109.47425 * 240.00025 * 2 1 3 5 5 C 1.52997 * 109.47425 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46927 * 60.00078 * 5 4 2 7 7 H 1.08997 * 109.47571 * 59.99813 * 6 5 4 8 8 C 1.52999 * 109.46984 * 180.02562 * 6 5 4 9 9 C 1.53009 * 109.46983 * 299.99939 * 6 5 4 10 10 H 1.08998 * 109.46717 * 179.97438 * 9 6 5 11 11 N 1.46897 * 109.47333 * 300.00089 * 9 6 5 12 12 C 1.46893 * 111.00104 * 205.00414 * 11 9 6 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.52999 * 109.46897 * 60.00392 * 9 6 5 23 23 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47406 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.47037 * 60.00134 * 1 2 3 26 26 H 1.09001 * 109.47142 * 59.99906 * 4 2 1 27 27 H 1.08999 * 109.47327 * 300.00261 * 4 2 1 28 28 H 1.08999 * 109.47081 * 300.00412 * 5 4 2 29 29 H 1.09000 * 109.47406 * 179.97438 * 5 4 2 30 30 H 1.09001 * 109.47094 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47064 * 299.99730 * 8 6 5 32 32 H 1.08999 * 109.47367 * 60.00124 * 8 6 5 33 33 H 1.00908 * 111.00037 * 328.95437 * 11 9 6 34 34 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 35 35 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 36 36 H 1.09000 * 109.47211 * 59.98987 * 13 12 11 37 37 H 1.09007 * 109.46376 * 299.99529 * 13 12 11 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47367 * 59.99483 * 22 9 6 40 40 H 1.09000 * 109.47064 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0003 7 1 3.7175 -2.4693 0.0000 8 6 5.6105 -1.4405 -0.0003 9 6 3.5704 -0.7203 1.2490 10 1 3.9338 -1.2342 2.1389 11 7 4.0596 0.6649 1.2487 12 6 4.1225 1.2012 2.6148 13 6 4.6345 2.6425 2.5738 14 6 4.6985 3.1929 3.9752 15 1 4.4030 2.5765 4.8114 16 6 5.1282 4.4853 4.1892 17 7 5.4877 5.2360 3.1709 18 14 5.2001 5.1702 5.9257 19 1 6.5359 4.8929 6.5123 20 1 4.9704 6.6369 5.8892 21 1 4.1513 4.5254 6.7559 22 6 2.0404 -0.7209 1.2492 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2074 -2.1392 27 1 1.6767 -1.7489 -1.2493 28 1 3.9330 0.3071 -1.2497 29 1 3.9334 -1.2349 -2.1393 30 1 5.9742 -1.9537 0.8899 31 1 5.9742 -1.9541 -0.8903 32 1 5.9731 -0.4126 -0.0002 33 1 4.9572 0.7313 0.7925 34 1 4.7992 0.5917 3.2137 35 1 3.1271 1.1822 3.0588 36 1 3.9575 3.2517 1.9750 37 1 5.6298 2.6618 2.1297 38 1 5.7897 6.1453 3.3215 39 1 1.6775 -1.7487 1.2494 40 1 1.6771 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590647663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:47 Heat of formation + Delta-G solvation = -57.862036 kcal Electronic energy + Delta-G solvation = -16240.441144 eV Core-core repulsion = 13859.507424 eV Total energy + Delta-G solvation = -2380.933720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46597 -36.57657 -35.07397 -34.17501 -31.70498 -29.77484 -29.05697 -26.09127 -24.96030 -23.18748 -22.51339 -21.27863 -19.85731 -18.43710 -17.03286 -16.46797 -16.20645 -15.49604 -15.36051 -14.99337 -14.67601 -14.34335 -14.13089 -13.86483 -13.25491 -13.18540 -12.99567 -12.85519 -12.84579 -12.51228 -12.47810 -12.24402 -12.00830 -11.88363 -11.61063 -11.36869 -11.26439 -11.11039 -10.96400 -10.68142 -10.56378 -9.14281 -8.21205 -6.32867 1.38835 1.40652 1.51864 2.39606 3.11960 3.41447 3.78056 3.89962 3.98910 4.23521 4.26792 4.45721 4.49782 4.55695 4.67113 4.68434 4.73561 4.81562 4.86893 4.94260 4.97787 5.05842 5.09951 5.11253 5.16619 5.19150 5.32493 5.34308 5.44532 5.52866 5.57109 5.60219 5.68648 5.76726 5.83462 6.17574 6.36357 6.64021 6.84695 7.36438 8.90963 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.005960 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.092847 B = 4696.913266 C = 5072.840223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.053 0.947 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.085 4.085 7 H 0.088 0.912 8 C -0.152 4.152 9 C 0.086 3.914 10 H 0.030 0.970 11 N -0.683 5.683 12 C 0.087 3.913 13 C 0.035 3.965 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.097 4.097 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.336 0.664 34 H 0.012 0.988 35 H 0.052 0.948 36 H -0.007 1.007 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -15.053 -7.822 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.072 0.928 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.103 4.103 7 H 0.106 0.894 8 C -0.210 4.210 9 C -0.024 4.024 10 H 0.048 0.952 11 N -0.317 5.317 12 C -0.042 4.042 13 C -0.002 4.002 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.135 4.135 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.156 0.844 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.011 0.989 37 H 0.007 0.993 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.211 -14.625 -7.999 17.789 hybrid contribution 1.024 0.488 1.295 1.721 sum -5.187 -14.137 -6.704 16.484 Atomic orbital electron populations 1.21807 0.95107 1.01914 1.01200 1.20960 0.95017 0.99666 0.94774 0.92837 1.21494 0.95172 1.00508 0.96881 1.21489 0.95890 1.00356 0.96774 1.21254 0.95351 0.99577 0.94144 0.89370 1.21894 0.95350 1.01367 1.02357 1.21620 0.95859 0.87893 0.96989 0.95193 1.60585 1.33332 1.20001 1.17736 1.21754 0.98532 0.95311 0.88577 1.18882 0.94153 0.91819 0.95349 1.21615 1.44170 0.98646 0.93960 0.92389 1.25973 0.94733 0.97364 1.01614 1.70107 1.45301 1.09119 1.32618 0.85424 0.78885 0.77415 0.79173 1.19627 1.20592 1.18828 1.21537 0.94066 1.00227 0.97676 0.91719 0.93956 0.92502 0.92024 0.91111 0.93074 0.90982 0.92985 0.90705 0.93741 0.84362 0.97007 0.92970 0.98884 0.99288 0.92722 0.90580 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 2 C -0.09 -2.24 2.56 -10.79 -0.03 -2.26 16 3 H 0.05 1.79 7.60 -2.38 -0.02 1.77 16 4 C -0.10 -2.21 5.20 30.59 0.16 -2.05 16 5 C -0.11 -2.41 5.04 30.59 0.15 -2.25 16 6 C -0.08 -1.91 2.49 -10.79 -0.03 -1.94 16 7 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.15 -3.37 8.96 71.98 0.64 -2.72 16 9 C 0.09 2.48 2.30 44.92 0.10 2.58 16 10 H 0.03 0.91 7.80 -2.39 -0.02 0.89 16 11 N -0.68 -24.78 4.82 -491.56 -2.37 -27.15 16 12 C 0.09 3.84 5.42 86.31 0.47 4.31 16 13 C 0.04 1.95 5.23 29.85 0.16 2.11 16 14 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.00 0.06 5.46 84.65 0.46 0.53 16 17 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.10 -2.62 4.81 30.59 0.15 -2.48 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.39 7.48 -2.39 -0.02 1.38 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.13 6.21 -2.39 -0.01 1.11 16 33 H 0.34 12.09 6.01 -89.69 -0.54 11.55 16 34 H 0.01 0.51 8.06 -2.39 -0.02 0.50 16 35 H 0.05 2.33 7.44 -2.38 -0.02 2.31 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.22 7.45 -2.39 -0.02 1.20 16 Total: -1.00 -63.89 306.56 3.51 -60.39 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.43 Total: 15.82 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.14 Total: -38.53 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -2.09 Total: -84.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.89 3.51 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590647663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.524 kcal (2) G-P(sol) polarization free energy of solvation -63.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds