Wall clock time and date at job start Thu Apr 9 2020 11:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.58913 * 2 1 4 4 C 1.54940 * 110.66809 * 237.00072 * 2 1 3 5 5 C 1.54593 * 102.91848 * 203.98083 * 4 2 1 6 6 C 1.53992 * 105.22891 * 21.90912 * 5 4 2 7 7 C 1.52994 * 109.92189 * 120.62629 * 6 5 4 8 8 C 1.53001 * 109.91479 * 241.92351 * 6 5 4 9 9 N 1.48123 * 106.94273 * 1.29579 * 6 5 4 10 10 C 1.46903 * 110.95395 * 214.10485 * 9 6 5 11 11 C 1.52997 * 109.47153 * 170.12480 * 10 9 6 12 12 C 1.52999 * 109.47081 * 172.45890 * 11 10 9 13 13 C 1.50695 * 109.47256 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00388 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00434 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99653 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47137 * 90.00013 * 17 15 13 19 19 H 1.48505 * 109.47137 * 209.99824 * 17 15 13 20 20 H 1.48495 * 109.47238 * 329.99966 * 17 15 13 21 21 H 1.08997 * 109.46722 * 189.76025 * 1 2 3 22 22 H 1.08997 * 109.47266 * 309.76224 * 1 2 3 23 23 H 1.09000 * 109.47081 * 69.76541 * 1 2 3 24 24 H 1.08994 * 110.72405 * 85.62103 * 4 2 1 25 25 H 1.08997 * 110.72089 * 322.33632 * 4 2 1 26 26 H 1.09001 * 110.30747 * 140.87358 * 5 4 2 27 27 H 1.08999 * 110.31236 * 262.93710 * 5 4 2 28 28 H 1.09000 * 109.47209 * 61.44933 * 7 6 5 29 29 H 1.08997 * 109.47611 * 181.44821 * 7 6 5 30 30 H 1.08996 * 109.47257 * 301.45768 * 7 6 5 31 31 H 1.08998 * 109.47572 * 68.13528 * 8 6 5 32 32 H 1.08996 * 109.47232 * 188.14426 * 8 6 5 33 33 H 1.09008 * 109.47034 * 308.13688 * 8 6 5 34 34 H 1.08997 * 109.46921 * 290.12489 * 10 9 6 35 35 H 1.08992 * 109.46975 * 50.12060 * 10 9 6 36 36 H 1.08998 * 109.47220 * 292.45640 * 11 10 9 37 37 H 1.09004 * 109.47230 * 52.46244 * 11 10 9 38 38 H 1.08998 * 109.46890 * 299.99952 * 12 11 10 39 39 H 1.08999 * 109.47398 * 59.99721 * 12 11 10 40 40 H 0.97004 * 120.00575 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9133 1.0204 0.0000 4 6 2.0769 -0.7895 -1.2158 5 6 3.4870 -1.2146 -0.7460 6 6 3.4344 -1.1602 0.7921 7 6 3.7500 -2.5397 1.3736 8 6 4.4383 -0.1292 1.3118 9 7 2.0578 -0.7583 1.1630 10 6 2.0614 0.0718 2.3750 11 6 0.6689 0.6687 2.5884 12 6 0.6199 1.3767 3.9439 13 6 -0.7518 1.9641 4.1545 14 1 -1.5127 1.8441 3.3974 15 6 -1.0356 2.6547 5.3135 16 7 -2.2325 3.1678 5.4971 17 14 0.2802 2.8617 6.6233 18 1 1.0461 4.1071 6.3631 19 1 -0.3609 2.9451 7.9602 20 1 1.2015 1.6976 6.5878 21 1 -0.3633 -1.0128 0.1742 22 1 -0.3633 0.6573 0.7899 23 1 -0.3633 0.3554 -0.9642 24 1 2.1402 -0.1486 -2.0951 25 1 1.4579 -1.6636 -1.4181 26 1 3.7080 -2.2279 -1.0813 27 1 4.2371 -0.5198 -1.1237 28 1 4.7571 -2.8359 1.0802 29 1 3.6856 -2.4991 2.4609 30 1 3.0324 -3.2669 0.9939 31 1 4.1110 0.8713 1.0289 32 1 4.5002 -0.1978 2.3978 33 1 5.4190 -0.3267 0.8788 34 1 2.3293 -0.5420 3.2349 35 1 2.7882 0.8762 2.2622 36 1 0.4557 1.3861 1.7960 37 1 -0.0750 -0.1278 2.5674 38 1 0.8331 0.6593 4.7363 39 1 1.3637 2.1731 3.9650 40 1 -2.4322 3.6534 6.3127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590764420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:49 Heat of formation + Delta-G solvation = -24.888542 kcal Electronic energy + Delta-G solvation = -16478.842538 eV Core-core repulsion = 14099.338656 eV Total energy + Delta-G solvation = -2379.503882 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02517 -36.38148 -34.61769 -34.12144 -31.95826 -29.45330 -28.31745 -28.06162 -24.56300 -24.17706 -22.03094 -20.96367 -19.71753 -18.84198 -17.01534 -16.64226 -16.23652 -15.86214 -15.29683 -14.81943 -14.48920 -14.43055 -14.08045 -13.66135 -13.55989 -13.34699 -13.09885 -12.87742 -12.85341 -12.46655 -12.42057 -12.24505 -11.90480 -11.83756 -11.58319 -11.43504 -11.41209 -11.35046 -11.24097 -10.85129 -10.76525 -9.24007 -8.29911 -6.33756 1.33755 1.36161 1.48486 2.35411 3.00631 3.05216 3.64476 3.80632 4.02576 4.17672 4.23264 4.27057 4.36683 4.44475 4.55041 4.66098 4.69108 4.77169 4.81758 4.86167 4.90013 4.95176 4.99252 5.02488 5.04035 5.09279 5.17265 5.21392 5.32178 5.40601 5.44503 5.50554 5.55822 5.63136 5.66102 6.17946 6.23500 6.32455 6.74091 7.30725 8.87046 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037578 B = 0.006597 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.929375 B = 4243.640915 C = 4739.994922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.077 3.923 7 C -0.123 4.123 8 C -0.165 4.165 9 N -0.514 5.514 10 C 0.051 3.949 11 C -0.094 4.094 12 C -0.011 4.011 13 C -0.530 4.530 14 H 0.030 0.970 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.248 1.248 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.435 -9.408 -12.223 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.048 4.048 3 H 0.058 0.942 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.012 4.012 7 C -0.180 4.180 8 C -0.223 4.223 9 N -0.238 5.238 10 C -0.077 4.077 11 C -0.131 4.131 12 C -0.049 4.049 13 C -0.568 4.568 14 H 0.049 0.951 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.171 1.171 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.014 -9.782 -11.988 21.560 hybrid contribution 0.177 1.223 0.812 1.478 sum 15.190 -8.560 -11.176 20.710 Atomic orbital electron populations 1.22174 0.94572 1.02319 1.02083 1.22693 0.95612 0.95464 0.91008 0.94159 1.22498 0.96207 1.00017 0.96409 1.22514 0.97234 1.02924 0.92789 1.22001 0.87389 0.95970 0.95818 1.21708 1.01444 0.94741 1.00136 1.22382 0.99940 0.98554 1.01427 1.64988 1.18754 1.37524 1.02578 1.22308 0.96586 0.95539 0.93258 1.21685 0.96167 0.98376 0.96881 1.19523 0.94673 0.95423 0.95244 1.21487 0.97915 1.33881 1.03567 0.95134 1.26034 0.97804 0.94690 1.00837 1.70071 1.22956 1.38170 1.28094 0.85642 0.79340 0.79860 0.77715 1.19083 1.20827 1.17148 0.92586 0.92567 0.91490 0.89931 0.90788 0.89710 0.90497 0.90700 0.93880 0.92493 0.93471 0.92812 0.90371 0.91604 0.93770 0.92404 0.93319 0.96539 0.96614 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.49 71.98 0.61 -3.93 16 2 C 0.06 1.63 2.41 45.26 0.11 1.74 16 3 H 0.04 1.16 8.01 -2.39 -0.02 1.14 16 4 C -0.11 -2.30 6.50 31.80 0.21 -2.10 16 5 C -0.12 -2.12 6.20 31.47 0.20 -1.93 16 6 C 0.08 1.74 0.89 3.63 0.00 1.74 16 7 C -0.12 -2.50 8.63 71.98 0.62 -1.88 16 8 C -0.16 -3.53 6.89 71.98 0.50 -3.03 16 9 N -0.51 -14.79 4.79 -809.19 -3.87 -18.66 16 10 C 0.05 1.70 4.12 86.30 0.36 2.06 16 11 C -0.09 -3.85 3.40 30.59 0.10 -3.74 16 12 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 13 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 14 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 15 C 0.00 0.17 5.47 84.65 0.46 0.63 16 16 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 17 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.06 1.99 4.38 -2.39 -0.01 1.98 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 26 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 27 H 0.08 1.23 7.68 -2.39 -0.02 1.21 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.10 7.14 -2.39 -0.02 1.09 16 32 H 0.05 1.23 7.34 -2.39 -0.02 1.21 16 33 H 0.08 1.32 8.13 -2.38 -0.02 1.30 16 34 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.04 1.42 5.55 -2.39 -0.01 1.41 16 36 H 0.06 2.41 5.54 -2.39 -0.01 2.39 16 37 H 0.05 2.12 7.49 -2.39 -0.02 2.10 16 38 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 39 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 40 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -66.13 298.71 2.76 -63.37 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.92 Total: 11.12 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.53 Total: -42.28 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -3.57 Total: -79.49 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -66.13 2.76 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590764420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.479 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds