Wall clock time and date at job start Thu Apr 9 2020 11:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.81735 * 2 1 4 4 C 1.54884 * 110.76057 * 236.66367 * 2 1 3 5 5 C 1.54270 * 104.19892 * 203.74220 * 4 2 1 6 6 C 1.53875 * 106.59649 * 23.61013 * 5 4 2 7 7 C 1.54267 * 106.60175 * 359.97438 * 6 5 4 8 8 H 1.09001 * 110.48205 * 95.20087 * 7 6 5 9 9 N 1.46898 * 110.48904 * 217.71661 * 7 6 5 10 10 C 1.46906 * 110.99888 * 273.54615 * 9 7 6 11 11 C 1.52999 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47317 * 60.00033 * 11 10 9 13 13 C 1.52992 * 109.46961 * 299.99572 * 11 10 9 14 14 C 1.50706 * 109.46573 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 H 1.09000 * 109.47667 * 296.65988 * 1 2 3 23 23 H 1.08998 * 109.47263 * 56.66841 * 1 2 3 24 24 H 1.09009 * 109.46571 * 176.66713 * 1 2 3 25 25 H 1.09003 * 110.49134 * 85.06259 * 4 2 1 26 26 H 1.09008 * 110.59664 * 322.47318 * 4 2 1 27 27 H 1.08992 * 110.03195 * 264.32433 * 5 4 2 28 28 H 1.08998 * 110.07587 * 142.91491 * 5 4 2 29 29 H 1.09003 * 110.02927 * 240.71412 * 6 5 4 30 30 H 1.08998 * 110.07811 * 119.30683 * 6 5 4 31 31 H 1.00901 * 111.00121 * 149.59202 * 9 7 6 32 32 H 1.09000 * 109.47033 * 59.99886 * 10 9 7 33 33 H 1.09001 * 109.46544 * 299.99942 * 10 9 7 34 34 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.47261 * 59.99813 * 12 11 10 37 37 H 1.09001 * 109.47066 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.47747 * 300.00196 * 13 11 10 39 39 H 1.09002 * 109.47103 * 60.00608 * 13 11 10 40 40 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0789 -0.7959 -1.2100 5 6 3.4932 -1.2268 -0.7693 6 6 3.4931 -1.2268 0.7695 7 6 2.0791 -0.7953 1.2102 8 1 1.4580 -1.6690 1.4078 9 7 2.1509 0.0629 2.4002 10 6 2.1740 -0.7419 3.6290 11 6 2.2481 0.1848 4.8442 12 6 1.0255 1.1044 4.8597 13 6 3.5210 1.0299 4.7641 14 6 2.2712 -0.6408 6.1048 15 1 2.2360 -1.7186 6.0451 16 6 2.3372 -0.0201 7.3342 17 7 2.3796 1.2923 7.4068 18 14 2.3665 -1.0435 8.8966 19 1 3.5528 -1.9364 8.8814 20 1 2.4383 -0.1441 10.0761 21 1 1.1308 -1.8635 8.9746 22 1 -0.3634 0.4611 0.9184 23 1 -0.3634 0.5647 -0.8586 24 1 -0.3633 -1.0260 -0.0598 25 1 2.1320 -0.1592 -2.0931 26 1 1.4582 -1.6699 -1.4076 27 1 4.2326 -0.5184 -1.1426 28 1 3.7129 -2.2269 -1.1426 29 1 4.2326 -0.5183 1.1428 30 1 3.7123 -2.2267 1.1437 31 1 1.3892 0.7245 2.4155 32 1 3.0448 -1.3974 3.6177 33 1 1.2669 -1.3436 3.6862 34 1 1.0084 1.7016 3.9480 35 1 1.0782 1.7643 5.7257 36 1 0.1186 0.5023 4.9168 37 1 3.5741 1.6897 5.6301 38 1 4.3920 0.3748 4.7531 39 1 3.5039 1.6270 3.8524 40 1 2.4256 1.7289 8.2717 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:00 Heat of formation + Delta-G solvation = -28.772478 kcal Electronic energy + Delta-G solvation = -16419.219700 eV Core-core repulsion = 14039.547398 eV Total energy + Delta-G solvation = -2379.672302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68267 -36.19693 -32.98321 -31.19230 -30.58672 -26.87190 -25.52528 -25.20047 -24.84650 -23.15153 -20.09551 -19.52326 -18.25654 -16.22348 -15.56974 -14.90541 -14.50286 -14.10563 -13.76554 -13.66934 -13.13518 -12.73977 -12.46538 -11.94783 -11.93562 -11.47346 -11.10697 -11.05319 -10.89728 -10.80574 -10.65996 -10.63619 -10.49374 -10.34049 -10.14633 -10.04256 -10.00090 -9.33659 -8.97744 -8.58251 -8.25438 -7.61972 -5.87710 -3.98006 3.34730 3.39359 3.42138 4.46335 4.68549 4.75630 4.80386 5.15115 5.37484 5.38782 5.57489 5.60739 5.67016 5.72587 5.80494 5.96508 6.00490 6.11021 6.19248 6.28456 6.39959 6.41439 6.45876 6.52172 6.66733 6.77637 6.94958 7.13209 7.21856 7.43528 7.53282 7.79565 7.82172 7.91141 8.07869 8.26264 8.39440 8.60333 9.03412 9.66709 11.12746 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045764 B = 0.006149 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.682547 B = 4552.405156 C = 4715.569497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.085 3.915 8 H 0.040 0.960 9 N -0.679 5.679 10 C 0.076 3.924 11 C 0.068 3.932 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.506 4.506 15 H 0.050 0.950 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.336 0.664 32 H 0.054 0.946 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -2.334 -13.731 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.058 0.942 9 N -0.311 5.311 10 C -0.052 4.052 11 C 0.068 3.932 12 C -0.189 4.189 13 C -0.176 4.176 14 C -0.545 4.545 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.645 -2.123 -13.602 13.782 hybrid contribution -0.910 -0.986 0.993 1.669 sum -1.555 -3.109 -12.609 13.079 Atomic orbital electron populations 1.21786 0.95375 1.01495 1.01613 1.22249 0.94913 0.99980 0.94669 0.89854 1.22352 0.96384 0.99382 0.97388 1.22091 0.96887 1.00624 0.96391 1.22161 0.98002 1.01118 0.94092 1.22388 0.95280 0.94456 0.90384 0.94209 1.60691 1.50836 1.18193 1.01421 1.22160 0.98021 0.95592 0.89425 1.18089 0.92773 0.92098 0.90274 1.21828 0.97409 0.99781 0.99925 1.21626 0.96847 0.99398 0.99711 1.21089 1.50225 0.92584 0.90621 0.93134 1.24882 0.95168 0.94839 0.98670 1.69825 1.50763 1.07581 1.24246 0.86729 0.78459 0.80148 0.83019 1.20419 1.21364 1.20510 0.92555 0.92835 0.92943 0.92069 0.91961 0.92097 0.92460 0.90516 0.92690 0.84400 0.92706 0.97139 0.97068 0.89870 0.96305 0.90822 0.96384 0.96106 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.26 37.15 0.34 -1.35 16 2 C -0.10 -1.26 2.90 -88.64 -0.26 -1.52 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.12 -1.29 6.27 -25.07 -0.16 -1.45 16 5 C -0.12 -1.42 6.80 -25.61 -0.17 -1.59 16 6 C -0.12 -1.66 6.46 -25.61 -0.17 -1.83 16 7 C 0.09 1.31 2.61 -66.06 -0.17 1.13 16 8 H 0.04 0.64 7.78 -51.93 -0.40 0.24 16 9 N -0.68 -12.39 5.50 -104.98 -0.58 -12.96 16 10 C 0.08 1.64 4.43 -3.82 -0.02 1.62 16 11 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 12 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 13 C -0.12 -2.93 8.09 37.15 0.30 -2.63 16 14 C -0.51 -13.86 8.01 -34.44 -0.28 -14.13 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.89 -24.79 9.35 55.43 0.52 -24.27 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.59 8.10 -51.92 -0.42 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.65 8.02 -51.92 -0.42 0.24 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.34 6.09 6.19 -39.29 -0.24 5.84 16 32 H 0.05 1.21 8.12 -51.93 -0.42 0.79 16 33 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -27.13 303.85 -8.40 -35.53 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.44 Total: 2.12 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.46 Total: -21.32 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.06 Total: -37.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.13 -8.40 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.757 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds