Wall clock time and date at job start Thu Apr 9 2020 11:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 5 5 O 1.21683 * 120.00005 * 180.02562 * 4 3 2 6 6 C 1.46379 * 119.99770 * 0.02562 * 4 3 2 7 7 H 1.08002 * 120.00108 * 359.97438 * 6 4 3 8 8 C 1.40047 * 119.99894 * 179.97438 * 6 4 3 9 9 N 1.30674 * 119.99798 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 120.00229 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46904 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47185 * 119.99727 * 10 8 6 13 13 H 1.48500 * 109.47142 * 240.00087 * 10 8 6 14 14 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 15 15 H 1.08994 * 110.43718 * 0.69672 * 14 3 2 16 16 C 1.54634 * 110.48730 * 238.15689 * 14 3 2 17 17 C 1.54689 * 101.66966 * 216.60900 * 16 14 3 18 18 N 1.46758 * 105.53710 * 25.25721 * 17 16 14 19 19 C 1.34422 * 111.30300 * 343.07777 * 18 17 16 20 20 O 1.21280 * 124.94856 * 180.37304 * 19 18 17 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 25 25 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 26 26 H 0.97004 * 119.99765 * 179.97438 * 9 8 6 27 27 H 1.09003 * 110.96275 * 334.64351 * 16 14 3 28 28 H 1.08996 * 110.97223 * 98.40383 * 16 14 3 29 29 H 1.08998 * 110.13673 * 266.27728 * 17 16 14 30 30 H 1.09001 * 110.29410 * 144.32078 * 17 16 14 31 31 H 0.97003 * 124.35174 * 163.10172 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6482 3.1640 1.1672 6 6 1.9994 1.3264 2.4349 7 1 1.6394 0.3082 2.4349 8 6 2.2333 1.9864 3.6477 9 7 2.6694 3.2182 3.6477 10 14 1.9219 1.1059 5.2655 11 1 1.4340 -0.2702 4.9941 12 1 3.1847 1.0394 6.0440 13 1 0.8987 1.8487 6.0444 14 6 2.2625 2.0718 -1.2687 15 1 2.0194 1.4215 -2.1089 16 6 3.7335 2.5407 -1.3553 17 6 3.5874 3.8953 -2.0880 18 7 2.2250 4.3556 -1.7953 19 6 1.4575 3.3508 -1.3388 20 8 0.2899 3.4546 -1.0278 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.8310 3.6755 4.4878 27 1 4.1578 2.6793 -0.3609 28 1 4.3321 1.8416 -1.9392 29 1 3.7165 3.7571 -3.1614 30 1 4.3170 4.6108 -1.7087 31 1 1.9177 5.2677 -1.9160 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619676969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:41 Heat of formation + Delta-G solvation = -65.164852 kcal Electronic energy + Delta-G solvation = -16520.349378 eV Core-core repulsion = 13802.006884 eV Total energy + Delta-G solvation = -2718.342494 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85613 -37.17663 -35.51820 -34.20271 -32.51537 -30.65281 -28.56441 -26.99253 -25.42934 -22.29709 -21.59338 -20.59013 -18.58240 -16.81943 -16.33047 -15.83220 -15.39087 -14.84277 -14.09575 -13.66651 -13.45037 -13.10984 -12.71924 -12.57084 -12.19083 -11.99876 -11.79051 -11.29120 -11.19939 -11.01789 -10.84400 -10.63233 -10.42150 -10.20734 -9.91328 -9.24853 -8.81925 -8.51002 -7.52989 -7.22779 -6.17704 -4.61587 3.13637 3.21740 3.25636 3.31015 3.98442 4.11050 4.52868 4.55652 5.06391 5.15227 5.41179 5.58059 5.72648 5.77106 5.80255 5.91401 6.17549 6.19772 6.32249 6.39774 6.69188 6.79250 7.03703 7.40381 7.47074 7.60360 7.64234 8.13236 8.33739 8.99190 9.04427 9.40773 10.58085 10.76855 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.010434 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.900370 B = 2682.801169 C = 3080.320948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.626 5.626 4 C 0.559 3.441 5 O -0.567 6.567 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.087 3.913 9 N -0.766 5.766 10 Si 0.905 3.095 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.128 3.872 15 H 0.099 0.901 16 C -0.144 4.144 17 C 0.114 3.886 18 N -0.731 5.731 19 C 0.527 3.473 20 O -0.532 6.532 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -3.951 -9.093 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.364 5.364 4 C 0.365 3.635 5 O -0.449 6.449 6 C -0.574 4.574 7 H 0.091 0.909 8 C -0.132 4.132 9 N -0.395 5.395 10 Si 0.730 3.270 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.202 1.202 14 C 0.019 3.981 15 H 0.116 0.884 16 C -0.183 4.183 17 C -0.012 4.012 18 N -0.387 5.387 19 C 0.312 3.688 20 O -0.407 6.407 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.090 -3.244 -8.781 9.592 hybrid contribution -0.294 0.012 0.729 0.786 sum 1.796 -3.233 -8.052 8.861 Atomic orbital electron populations 1.22182 0.97471 1.00035 1.02769 1.21229 0.93483 0.83917 1.01217 1.48059 1.71335 1.13304 1.03659 1.18240 0.77386 0.85803 0.82036 1.90591 1.50286 1.18137 1.85858 1.21013 1.46948 1.00430 0.89025 0.90873 1.25724 0.92865 0.94374 1.00265 1.70030 1.32311 1.10097 1.27062 0.86357 0.78415 0.80345 0.81924 1.18686 1.20220 1.20231 1.21197 0.94135 0.92639 0.90176 0.88363 1.23070 0.96815 0.94989 1.03405 1.21891 0.83985 0.96978 0.98313 1.45951 1.12800 1.11774 1.68209 1.21159 0.86321 0.87080 0.74257 1.90654 1.16413 1.85115 1.48559 0.93441 0.93394 0.91675 0.89922 0.93261 0.92273 0.87654 0.90573 0.92250 0.90992 0.76126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.24 37.16 0.38 -2.66 16 2 C 0.13 2.36 5.82 -4.04 -0.02 2.34 16 3 N -0.63 -14.21 2.50 -167.77 -0.42 -14.63 16 4 C 0.56 15.67 6.84 -12.98 -0.09 15.58 16 5 O -0.57 -17.54 12.32 5.20 0.06 -17.47 16 6 C -0.54 -15.05 8.74 -35.63 -0.31 -15.36 16 7 H 0.07 1.88 6.00 -52.49 -0.31 1.57 16 8 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 9 N -0.77 -22.92 11.83 55.55 0.66 -22.26 16 10 Si 0.90 20.28 29.56 -169.99 -5.02 15.26 16 11 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 C 0.13 2.51 3.41 -67.94 -0.23 2.27 16 15 H 0.10 1.59 7.86 -51.93 -0.41 1.18 16 16 C -0.14 -2.45 6.43 -24.98 -0.16 -2.61 16 17 C 0.11 1.66 7.79 -3.01 -0.02 1.63 16 18 N -0.73 -13.12 6.24 -59.09 -0.37 -13.49 16 19 C 0.53 11.64 6.52 -10.85 -0.07 11.57 16 20 O -0.53 -13.97 18.02 5.56 0.10 -13.87 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.08 1.59 6.09 -51.93 -0.32 1.27 16 25 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 26 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 27 H 0.11 2.26 6.22 -51.93 -0.32 1.94 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.40 6.45 8.96 -40.82 -0.37 6.08 16 LS Contribution 263.31 15.07 3.97 3.97 Total: -1.00 -36.18 263.31 -5.46 -41.64 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.81 Total: 5.74 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -0.63 Total: 15.11 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.13 Total: -50.37 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: 0.16 Total: -31.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -36.18 -5.46 -41.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619676969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.529 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds