Wall clock time and date at job start Thu Apr 9 2020 11:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 5 5 O 1.21683 * 120.00005 * 180.02562 * 4 3 2 6 6 C 1.46379 * 119.99770 * 0.02562 * 4 3 2 7 7 H 1.08002 * 120.00108 * 359.97438 * 6 4 3 8 8 C 1.40047 * 119.99894 * 179.97438 * 6 4 3 9 9 N 1.30674 * 119.99798 * 359.97438 * 8 6 4 10 10 Si 1.86802 * 120.00229 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46904 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47185 * 119.99727 * 10 8 6 13 13 H 1.48500 * 109.47142 * 240.00087 * 10 8 6 14 14 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 15 15 H 1.08994 * 110.43718 * 0.69672 * 14 3 2 16 16 C 1.54634 * 110.48730 * 238.15689 * 14 3 2 17 17 C 1.54689 * 101.66966 * 216.60900 * 16 14 3 18 18 N 1.46758 * 105.53710 * 25.25721 * 17 16 14 19 19 C 1.34422 * 111.30300 * 343.07777 * 18 17 16 20 20 O 1.21280 * 124.94856 * 180.37304 * 19 18 17 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 25 25 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 26 26 H 0.97004 * 119.99765 * 179.97438 * 9 8 6 27 27 H 1.09003 * 110.96275 * 334.64351 * 16 14 3 28 28 H 1.08996 * 110.97223 * 98.40383 * 16 14 3 29 29 H 1.08998 * 110.13673 * 266.27728 * 17 16 14 30 30 H 1.09001 * 110.29410 * 144.32078 * 17 16 14 31 31 H 0.97003 * 124.35174 * 163.10172 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6482 3.1640 1.1672 6 6 1.9994 1.3264 2.4349 7 1 1.6394 0.3082 2.4349 8 6 2.2333 1.9864 3.6477 9 7 2.6694 3.2182 3.6477 10 14 1.9219 1.1059 5.2655 11 1 1.4340 -0.2702 4.9941 12 1 3.1847 1.0394 6.0440 13 1 0.8987 1.8487 6.0444 14 6 2.2625 2.0718 -1.2687 15 1 2.0194 1.4215 -2.1089 16 6 3.7335 2.5407 -1.3553 17 6 3.5874 3.8953 -2.0880 18 7 2.2250 4.3556 -1.7953 19 6 1.4575 3.3508 -1.3388 20 8 0.2899 3.4546 -1.0278 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.8310 3.6755 4.4878 27 1 4.1578 2.6793 -0.3609 28 1 4.3321 1.8416 -1.9392 29 1 3.7165 3.7571 -3.1614 30 1 4.3170 4.6108 -1.7087 31 1 1.9177 5.2677 -1.9160 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619676969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:41 Heat of formation + Delta-G solvation = -94.377147 kcal Electronic energy + Delta-G solvation = -16521.616118 eV Core-core repulsion = 13802.006884 eV Total energy + Delta-G solvation = -2719.609234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.46801 -39.06000 -37.16422 -36.04572 -34.61369 -32.17206 -30.14977 -28.80174 -27.20318 -23.95317 -23.02560 -22.24117 -20.40044 -18.45754 -18.09701 -17.71336 -17.05455 -16.54159 -15.85687 -15.26811 -15.14766 -14.68741 -14.35402 -14.31535 -13.96161 -13.40555 -13.26581 -13.04715 -12.99579 -12.76700 -12.53589 -12.15997 -12.06810 -11.95415 -11.61713 -11.00646 -10.85868 -9.98993 -9.61785 -9.03078 -8.25264 -6.77984 1.37464 1.38355 1.54865 1.64236 2.24369 2.48582 2.60679 2.89240 3.51744 3.74285 3.87722 4.10357 4.21712 4.33824 4.50835 4.66641 4.74643 4.79429 4.95929 5.06743 5.14775 5.36384 5.37526 5.53440 5.81805 5.98240 6.12004 6.18756 6.43566 6.92231 7.38533 7.45530 8.52242 8.71626 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.010434 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.900370 B = 2682.801169 C = 3080.320948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 N -0.629 5.629 4 C 0.544 3.456 5 O -0.609 6.609 6 C -0.565 4.565 7 H 0.089 0.911 8 C 0.029 3.971 9 N -0.821 5.821 10 Si 0.988 3.012 11 H -0.245 1.245 12 H -0.266 1.266 13 H -0.276 1.276 14 C 0.119 3.881 15 H 0.141 0.859 16 C -0.137 4.137 17 C 0.113 3.887 18 N -0.725 5.725 19 C 0.508 3.492 20 O -0.591 6.591 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.023 0.977 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.270 0.730 27 H 0.054 0.946 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -5.989 -10.327 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.004 4.004 3 N -0.365 5.365 4 C 0.350 3.650 5 O -0.494 6.494 6 C -0.601 4.601 7 H 0.107 0.893 8 C -0.185 4.185 9 N -0.451 5.451 10 Si 0.808 3.192 11 H -0.168 1.168 12 H -0.191 1.191 13 H -0.202 1.202 14 C 0.010 3.990 15 H 0.159 0.841 16 C -0.176 4.176 17 C -0.010 4.010 18 N -0.379 5.379 19 C 0.294 3.706 20 O -0.471 6.471 21 H 0.105 0.895 22 H 0.060 0.940 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.821 -5.308 -10.078 11.734 hybrid contribution -0.488 0.661 0.989 1.286 sum 2.333 -4.646 -9.089 10.471 Atomic orbital electron populations 1.22089 0.97254 1.01810 1.00371 1.21502 0.93607 0.82111 1.03191 1.47877 1.70395 1.14622 1.03576 1.18505 0.77068 0.85554 0.83862 1.90540 1.51908 1.19845 1.87141 1.21533 1.47240 1.01386 0.89975 0.89330 1.26898 0.91914 0.95012 1.04688 1.70196 1.34168 1.12329 1.28415 0.85110 0.78540 0.79459 0.76093 1.16822 1.19050 1.20174 1.21602 0.95279 0.92188 0.89884 0.84132 1.23026 0.95245 0.97412 1.01876 1.22212 0.81973 0.95706 1.01126 1.46075 1.13814 1.11584 1.66461 1.21785 0.86006 0.88992 0.73824 1.90607 1.18889 1.86270 1.51346 0.89489 0.94010 0.95793 0.90672 0.88449 0.91986 0.92677 0.85799 0.86896 0.90323 0.75431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 10.24 71.98 0.74 -4.80 16 2 C 0.12 4.21 5.82 86.38 0.50 4.72 16 3 N -0.63 -28.24 2.50 -802.92 -2.01 -30.25 16 4 C 0.54 31.32 6.84 86.36 0.59 31.91 16 5 O -0.61 -39.24 12.32 -4.29 -0.05 -39.29 16 6 C -0.56 -32.24 8.74 24.83 0.22 -32.02 16 7 H 0.09 4.58 6.00 -2.91 -0.02 4.56 16 8 C 0.03 1.67 5.50 85.30 0.47 2.14 16 9 N -0.82 -50.94 11.83 21.84 0.26 -50.68 16 10 Si 0.99 42.07 29.56 68.60 2.03 44.10 16 11 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.12 4.44 3.41 44.99 0.15 4.60 16 15 H 0.14 3.98 7.86 -2.39 -0.02 3.96 16 16 C -0.14 -4.35 6.43 31.73 0.20 -4.15 16 17 C 0.11 2.98 7.79 86.91 0.68 3.66 16 18 N -0.73 -25.38 6.24 -459.45 -2.87 -28.25 16 19 C 0.51 22.45 6.52 87.90 0.57 23.02 16 20 O -0.59 -31.99 18.02 -3.03 -0.05 -32.05 16 21 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 2.77 6.09 -2.39 -0.01 2.76 16 25 H 0.10 2.54 7.95 -2.39 -0.02 2.52 16 26 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 27 H 0.05 2.36 6.22 -2.39 -0.01 2.35 16 28 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.41 12.97 8.96 -92.71 -0.83 12.14 16 Total: -1.00 -84.79 263.31 1.75 -83.05 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.32 Total: 24.29 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 4.12 Total: 29.08 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.62 Total: -109.18 kcal Atomic # 8 Polarization: -71.23 SS G_CDS: -0.11 Total: -71.34 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -84.79 1.75 -83.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619676969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.331 kcal (2) G-P(sol) polarization free energy of solvation -84.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds