Wall clock time and date at job start Thu Apr 9 2020 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34771 * 119.99594 * 90.00195 * 3 2 1 5 5 O 1.21693 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.46371 * 120.00549 * 0.02562 * 4 3 2 7 7 H 1.08001 * 120.00013 * 359.97438 * 6 4 3 8 8 C 1.40050 * 120.00736 * 180.02562 * 6 4 3 9 9 N 1.30674 * 119.99514 * 359.97438 * 8 6 4 10 10 Si 1.86793 * 120.00346 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47017 * 90.00027 * 10 8 6 12 12 H 1.48505 * 109.47277 * 209.99786 * 10 8 6 13 13 H 1.48497 * 109.47447 * 330.00052 * 10 8 6 14 14 C 1.46501 * 120.00098 * 270.00050 * 3 2 1 15 15 H 1.08997 * 110.43295 * 359.30293 * 14 3 2 16 16 C 1.54627 * 110.48199 * 121.84147 * 14 3 2 17 17 C 1.54696 * 101.66381 * 143.39365 * 16 14 3 18 18 N 1.46754 * 105.53670 * 334.74034 * 17 16 14 19 19 C 1.34423 * 111.30027 * 16.92306 * 18 17 16 20 20 O 1.21283 * 124.94245 * 179.63057 * 19 18 17 21 21 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 22 22 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 26 26 H 0.97000 * 120.00227 * 180.02562 * 9 8 6 27 27 H 1.08999 * 110.96812 * 261.58990 * 16 14 3 28 28 H 1.08994 * 110.97198 * 25.36197 * 16 14 3 29 29 H 1.09000 * 110.29249 * 215.67271 * 17 16 14 30 30 H 1.09004 * 110.20872 * 93.75729 * 17 16 14 31 31 H 0.97003 * 124.35155 * 196.94293 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6490 3.1637 1.1672 6 6 1.9996 1.3263 2.4348 7 1 1.6396 0.3081 2.4349 8 6 2.2325 1.9866 3.6478 9 7 2.6676 3.2188 3.6478 10 14 1.9212 1.1059 5.2654 11 1 3.1590 0.4064 5.6943 12 1 1.5282 2.0958 6.3003 13 1 0.8292 0.1155 5.0877 14 6 2.2625 2.0719 -1.2687 15 1 2.0428 1.4133 -2.1089 16 6 1.4131 3.3611 -1.3552 17 6 2.3781 4.3229 -2.0878 18 7 3.7271 3.8246 -1.7952 19 6 3.6924 2.5607 -1.3388 20 8 4.6658 1.9075 -1.0278 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.8293 3.6760 4.4878 27 1 0.5082 3.1935 -1.9392 28 1 1.1702 3.7357 -0.3608 29 1 2.2604 5.3380 -1.7086 30 1 2.1915 4.2980 -3.1615 31 1 4.5394 4.3410 -1.9154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619676970.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:42 Heat of formation + Delta-G solvation = -65.296873 kcal Electronic energy + Delta-G solvation = -16485.963126 eV Core-core repulsion = 13767.614907 eV Total energy + Delta-G solvation = -2718.348219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86036 -37.19537 -35.52112 -34.21767 -32.51621 -30.63756 -28.67748 -26.97716 -25.42656 -22.37302 -21.46750 -20.68917 -18.57428 -16.80734 -16.44545 -15.83464 -15.39463 -14.68923 -14.06317 -13.66666 -13.56647 -13.10549 -12.81488 -12.62919 -12.45238 -11.87225 -11.60226 -11.44950 -11.20385 -11.02374 -10.87658 -10.59274 -10.47051 -10.23529 -9.95378 -9.27099 -8.81037 -8.51622 -7.53042 -7.23322 -6.17515 -4.61629 3.15126 3.21489 3.24264 3.29904 3.97923 4.11079 4.52489 4.55845 5.05320 5.15856 5.40927 5.57683 5.70827 5.74825 5.76643 5.92456 6.07852 6.14790 6.30679 6.34020 6.63495 6.78136 6.89703 7.39633 7.46911 7.59542 7.63495 8.13070 8.33421 8.98233 9.04299 9.40739 10.58179 10.76917 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.010397 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.557329 B = 2692.497991 C = 3092.490219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.625 5.625 4 C 0.559 3.441 5 O -0.567 6.567 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.088 3.912 9 N -0.766 5.766 10 Si 0.905 3.095 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.264 1.264 14 C 0.128 3.872 15 H 0.099 0.901 16 C -0.143 4.143 17 C 0.113 3.887 18 N -0.731 5.731 19 C 0.527 3.473 20 O -0.534 6.534 21 H 0.065 0.935 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.267 0.733 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 -1.333 -9.073 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.363 5.363 4 C 0.365 3.635 5 O -0.449 6.449 6 C -0.574 4.574 7 H 0.091 0.909 8 C -0.132 4.132 9 N -0.395 5.395 10 Si 0.730 3.270 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.019 3.981 15 H 0.117 0.883 16 C -0.182 4.182 17 C -0.012 4.012 18 N -0.387 5.387 19 C 0.312 3.688 20 O -0.409 6.409 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.338 -0.969 -8.760 9.823 hybrid contribution 0.127 -0.155 0.726 0.753 sum -4.210 -1.125 -8.035 9.140 Atomic orbital electron populations 1.22202 0.97568 1.00486 1.02137 1.21216 0.93047 0.84120 1.01595 1.48034 1.71185 1.13427 1.03655 1.18230 0.77256 0.85939 0.82024 1.90593 1.49972 1.18462 1.85855 1.20971 1.47220 1.00218 0.89040 0.90930 1.25721 0.92840 0.94402 1.00252 1.70017 1.32071 1.10233 1.27175 0.86411 0.79314 0.79751 0.81544 1.19761 1.20529 1.18839 1.21193 0.92139 0.94594 0.90168 0.88338 1.23062 0.96933 0.94807 1.03375 1.21896 0.82169 0.98801 0.98326 1.45945 1.08900 1.15646 1.68171 1.21176 0.91875 0.81545 0.74234 1.90655 1.40848 1.60777 1.48641 0.91634 0.93706 0.93170 0.93195 0.89996 0.92213 0.90621 0.87663 0.91002 0.92240 0.76106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.12 2.34 5.82 -4.04 -0.02 2.32 16 3 N -0.63 -14.22 2.50 -167.77 -0.42 -14.64 16 4 C 0.56 15.69 6.84 -12.99 -0.09 15.60 16 5 O -0.57 -17.55 12.33 5.20 0.06 -17.49 16 6 C -0.54 -15.07 8.74 -35.63 -0.31 -15.38 16 7 H 0.07 1.87 6.00 -52.49 -0.31 1.55 16 8 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 9 N -0.77 -22.92 11.83 55.55 0.66 -22.26 16 10 Si 0.91 20.28 29.56 -169.99 -5.02 15.26 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.13 2.52 3.41 -67.94 -0.23 2.29 16 15 H 0.10 1.59 7.85 -51.93 -0.41 1.19 16 16 C -0.14 -2.44 6.43 -24.98 -0.16 -2.60 16 17 C 0.11 1.65 7.79 -3.01 -0.02 1.63 16 18 N -0.73 -13.11 6.24 -59.09 -0.37 -13.48 16 19 C 0.53 11.68 6.52 -10.86 -0.07 11.61 16 20 O -0.53 -14.12 18.02 5.56 0.10 -14.02 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.82 7.94 -51.93 -0.41 0.40 16 25 H 0.08 1.65 6.09 -51.93 -0.32 1.33 16 26 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 2.26 6.21 -51.93 -0.32 1.94 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 6.45 8.96 -40.82 -0.37 6.08 16 LS Contribution 263.30 15.07 3.97 3.97 Total: -1.00 -36.21 263.30 -5.46 -41.67 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.81 Total: 5.44 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -0.63 Total: 15.56 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.13 Total: -50.38 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: 0.16 Total: -31.51 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -36.21 -5.46 -41.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619676970.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.627 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds