Wall clock time and date at job start Thu Apr 9 2020 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34771 * 119.99594 * 90.00195 * 3 2 1 5 5 O 1.21693 * 119.99726 * 179.97438 * 4 3 2 6 6 C 1.46371 * 120.00549 * 0.02562 * 4 3 2 7 7 H 1.08001 * 120.00013 * 359.97438 * 6 4 3 8 8 C 1.40050 * 120.00736 * 180.02562 * 6 4 3 9 9 N 1.30674 * 119.99514 * 359.97438 * 8 6 4 10 10 Si 1.86793 * 120.00346 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47017 * 90.00027 * 10 8 6 12 12 H 1.48505 * 109.47277 * 209.99786 * 10 8 6 13 13 H 1.48497 * 109.47447 * 330.00052 * 10 8 6 14 14 C 1.46501 * 120.00098 * 270.00050 * 3 2 1 15 15 H 1.08997 * 110.43295 * 359.30293 * 14 3 2 16 16 C 1.54627 * 110.48199 * 121.84147 * 14 3 2 17 17 C 1.54696 * 101.66381 * 143.39365 * 16 14 3 18 18 N 1.46754 * 105.53670 * 334.74034 * 17 16 14 19 19 C 1.34423 * 111.30027 * 16.92306 * 18 17 16 20 20 O 1.21283 * 124.94245 * 179.63057 * 19 18 17 21 21 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 22 22 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 26 26 H 0.97000 * 120.00227 * 180.02562 * 9 8 6 27 27 H 1.08999 * 110.96812 * 261.58990 * 16 14 3 28 28 H 1.08994 * 110.97198 * 25.36197 * 16 14 3 29 29 H 1.09000 * 110.29249 * 215.67271 * 17 16 14 30 30 H 1.09004 * 110.20872 * 93.75729 * 17 16 14 31 31 H 0.97003 * 124.35155 * 196.94293 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6490 3.1637 1.1672 6 6 1.9996 1.3263 2.4348 7 1 1.6396 0.3081 2.4349 8 6 2.2325 1.9866 3.6478 9 7 2.6676 3.2188 3.6478 10 14 1.9212 1.1059 5.2654 11 1 3.1590 0.4064 5.6943 12 1 1.5282 2.0958 6.3003 13 1 0.8292 0.1155 5.0877 14 6 2.2625 2.0719 -1.2687 15 1 2.0428 1.4133 -2.1089 16 6 1.4131 3.3611 -1.3552 17 6 2.3781 4.3229 -2.0878 18 7 3.7271 3.8246 -1.7952 19 6 3.6924 2.5607 -1.3388 20 8 4.6658 1.9075 -1.0278 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.8293 3.6760 4.4878 27 1 0.5082 3.1935 -1.9392 28 1 1.1702 3.7357 -0.3608 29 1 2.2604 5.3380 -1.7086 30 1 2.1915 4.2980 -3.1615 31 1 4.5394 4.3410 -1.9154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619676970.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:42 Heat of formation + Delta-G solvation = -94.497802 kcal Electronic energy + Delta-G solvation = -16487.229373 eV Core-core repulsion = 13767.614907 eV Total energy + Delta-G solvation = -2719.614466 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.47842 -39.07799 -37.18074 -36.04263 -34.61509 -32.12767 -30.20826 -28.79308 -27.18927 -23.96994 -22.86798 -22.37469 -20.39577 -18.44817 -18.16878 -17.76175 -17.06170 -16.44145 -15.76999 -15.26844 -15.20186 -14.69797 -14.44668 -14.25029 -14.12573 -13.37937 -13.17898 -13.04958 -12.91855 -12.74579 -12.54546 -12.14468 -12.06730 -11.98927 -11.60073 -11.03413 -10.85888 -10.00205 -9.62371 -9.03065 -8.25335 -6.78366 1.37806 1.39023 1.53349 1.62268 2.24273 2.48322 2.59515 2.89066 3.50917 3.72686 3.88406 4.09488 4.19887 4.34103 4.51289 4.69310 4.75035 4.78708 5.02474 5.05846 5.19006 5.36188 5.38248 5.57020 5.81051 5.96870 6.10777 6.18120 6.43123 6.91811 7.37029 7.44861 8.51920 8.71297 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.010397 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.557329 B = 2692.497991 C = 3092.490219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.116 3.884 3 N -0.629 5.629 4 C 0.545 3.455 5 O -0.609 6.609 6 C -0.566 4.566 7 H 0.088 0.912 8 C 0.030 3.970 9 N -0.821 5.821 10 Si 0.988 3.012 11 H -0.269 1.269 12 H -0.273 1.273 13 H -0.245 1.245 14 C 0.120 3.880 15 H 0.141 0.859 16 C -0.136 4.136 17 C 0.113 3.887 18 N -0.724 5.724 19 C 0.508 3.492 20 O -0.594 6.594 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.271 0.729 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -2.380 -10.338 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.007 4.007 3 N -0.365 5.365 4 C 0.350 3.650 5 O -0.494 6.494 6 C -0.602 4.602 7 H 0.106 0.894 8 C -0.185 4.185 9 N -0.451 5.451 10 Si 0.808 3.192 11 H -0.194 1.194 12 H -0.197 1.197 13 H -0.168 1.168 14 C 0.011 3.989 15 H 0.159 0.841 16 C -0.174 4.174 17 C -0.010 4.010 18 N -0.378 5.378 19 C 0.294 3.706 20 O -0.474 6.474 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.160 -2.012 -10.088 11.990 hybrid contribution 0.682 0.192 0.993 1.220 sum -5.478 -1.820 -9.095 10.772 Atomic orbital electron populations 1.22063 0.95002 1.02400 1.01592 1.21462 0.95093 0.82082 1.02074 1.47855 1.70291 1.14739 1.03588 1.18488 0.76955 0.85691 0.83833 1.90541 1.51592 1.20163 1.87134 1.21498 1.47586 1.01134 0.90014 0.89423 1.26895 0.91877 0.95038 1.04667 1.70186 1.33898 1.12466 1.28500 0.85160 0.79648 0.78627 0.75779 1.19390 1.19749 1.16828 1.21595 0.91013 0.96385 0.89861 0.84126 1.23006 0.98939 0.93658 1.01824 1.22217 0.79427 0.98233 1.01150 1.46063 1.10854 1.14492 1.66364 1.21806 0.92425 0.82596 0.73792 1.90606 1.42724 1.62583 1.51503 0.94555 0.91799 0.89982 0.90185 0.92095 0.91956 0.85962 0.92703 0.90297 0.86854 0.75372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 10.24 71.98 0.74 -3.72 16 2 C 0.12 4.18 5.82 86.38 0.50 4.68 16 3 N -0.63 -28.42 2.50 -802.92 -2.01 -30.43 16 4 C 0.54 31.43 6.84 86.36 0.59 32.03 16 5 O -0.61 -39.28 12.33 -4.33 -0.05 -39.34 16 6 C -0.57 -32.42 8.74 24.83 0.22 -32.20 16 7 H 0.09 4.56 6.00 -2.91 -0.02 4.54 16 8 C 0.03 1.70 5.50 85.30 0.47 2.17 16 9 N -0.82 -50.93 11.83 21.84 0.26 -50.68 16 10 Si 0.99 42.11 29.56 68.60 2.03 44.14 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 14 C 0.12 4.50 3.41 44.98 0.15 4.65 16 15 H 0.14 4.01 7.85 -2.39 -0.02 3.99 16 16 C -0.14 -4.33 6.43 31.73 0.20 -4.13 16 17 C 0.11 2.98 7.79 86.91 0.68 3.66 16 18 N -0.72 -25.30 6.24 -459.45 -2.87 -28.16 16 19 C 0.51 22.50 6.52 87.90 0.57 23.08 16 20 O -0.59 -32.31 18.02 -3.04 -0.05 -32.37 16 21 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.08 2.39 7.94 -2.38 -0.02 2.37 16 25 H 0.06 2.43 6.09 -2.39 -0.01 2.41 16 26 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 27 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.05 2.36 6.21 -2.39 -0.01 2.35 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.41 12.93 8.96 -92.71 -0.83 12.10 16 Total: -1.00 -84.58 263.30 1.75 -82.83 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.32 Total: 23.79 kcal Atomic # 6 Polarization: 26.08 SS G_CDS: 4.12 Total: 30.21 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.62 Total: -109.27 kcal Atomic # 8 Polarization: -71.59 SS G_CDS: -0.11 Total: -71.70 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -84.58 1.75 -82.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619676970.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.665 kcal (2) G-P(sol) polarization free energy of solvation -84.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds