Wall clock time and date at job start Thu Apr 9 2020 11:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 115.55057 * 2 1 4 4 C 1.34779 * 119.99764 * 294.61964 * 3 2 1 5 5 O 1.21277 * 119.99764 * 354.96146 * 4 3 2 6 6 C 1.50699 * 120.00011 * 174.95474 * 4 3 2 7 7 H 1.09000 * 109.47034 * 320.00301 * 6 4 3 8 8 N 1.46902 * 109.47255 * 200.00584 * 6 4 3 9 9 C 1.52993 * 109.47325 * 80.00388 * 6 4 3 10 10 C 1.52999 * 109.47310 * 184.99921 * 9 6 4 11 11 C 1.50707 * 109.46837 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99805 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47132 * 89.99893 * 15 13 11 17 17 H 1.48501 * 109.46687 * 209.99614 * 15 13 11 18 18 H 1.48500 * 109.47406 * 329.99417 * 15 13 11 19 19 C 1.53001 * 117.49482 * 145.66139 * 2 1 3 20 20 C 1.52997 * 117.50292 * 214.32090 * 2 1 3 21 21 H 1.09007 * 109.46467 * 65.41634 * 1 2 3 22 22 H 1.08999 * 109.47329 * 185.41277 * 1 2 3 23 23 H 1.08997 * 109.47512 * 305.42211 * 1 2 3 24 24 H 0.96999 * 120.00015 * 114.62968 * 3 2 1 25 25 H 1.00901 * 111.00192 * 300.00247 * 8 6 4 26 26 H 1.00905 * 111.00062 * 63.94819 * 8 6 4 27 27 H 1.09002 * 109.47252 * 305.00463 * 9 6 4 28 28 H 1.09007 * 109.47115 * 65.00043 * 9 6 4 29 29 H 1.08992 * 109.47310 * 299.99885 * 10 9 6 30 30 H 1.08992 * 109.46941 * 60.00522 * 10 9 6 31 31 H 0.97000 * 120.00045 * 180.02562 * 14 13 11 32 32 H 1.08999 * 117.49940 * 215.00026 * 19 2 1 33 33 H 1.09002 * 117.50329 * 0.02998 * 19 2 1 34 34 H 1.09009 * 117.49603 * 359.97438 * 20 2 1 35 35 H 1.08996 * 117.50118 * 144.97482 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3217 0.0000 4 6 2.0138 2.1394 -1.0611 5 8 1.4354 1.7476 -2.0525 6 6 2.5667 3.5405 -1.0157 7 1 2.3944 3.9672 -0.0276 8 7 1.8951 4.3652 -2.0290 9 6 4.0694 3.5053 -1.3010 10 6 4.6536 4.9093 -1.1325 11 6 6.1337 4.8746 -1.4142 12 1 6.6099 3.9443 -1.6866 13 6 6.8797 6.0307 -1.3252 14 7 8.1713 6.0004 -1.5706 15 14 6.0558 7.6399 -0.8548 16 1 6.0890 7.8000 0.6212 17 1 6.7781 8.7704 -1.4917 18 1 4.6456 7.6286 -1.3200 19 6 2.2363 -1.1207 0.7656 20 6 2.2365 -1.1208 -0.7651 21 1 -0.3632 0.4276 -0.9346 22 1 -0.3634 -1.0231 0.0969 23 1 -0.3634 0.5956 0.8374 24 1 2.6869 1.6083 0.7636 25 1 2.0399 3.9901 -2.9545 26 1 0.9109 4.4571 -1.8261 27 1 4.5558 2.8232 -0.6036 28 1 4.2375 3.1619 -2.3219 29 1 4.1673 5.5913 -1.8299 30 1 4.4857 5.2525 -0.1118 31 1 8.6962 6.8137 -1.5076 32 1 3.1712 -0.8746 1.2691 33 1 1.6111 -1.8582 1.2688 34 1 1.6112 -1.8585 -1.2683 35 1 3.1712 -0.8747 -1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691561298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:51 Heat of formation + Delta-G solvation = -26.902696 kcal Electronic energy + Delta-G solvation = -15668.163761 eV Core-core repulsion = 13087.313533 eV Total energy + Delta-G solvation = -2580.850228 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06749 -37.68844 -35.24030 -32.84435 -32.68823 -30.48429 -28.71655 -26.77674 -23.85897 -22.70632 -20.94763 -20.01777 -19.55415 -17.21902 -16.62478 -16.47603 -15.58030 -15.13943 -14.54743 -14.12461 -14.00863 -13.43496 -13.24027 -12.69350 -12.60564 -12.50840 -12.37834 -11.69257 -11.65723 -11.07441 -10.91852 -10.82356 -10.43888 -10.11564 -9.90686 -9.76256 -9.56219 -9.10504 -9.03599 -8.49850 -8.37536 -5.99138 -3.96775 2.72715 3.09191 3.36277 3.44190 3.52378 3.56533 4.48829 4.51962 4.66442 4.75878 4.81085 4.99813 5.35316 5.40633 5.41252 5.46607 5.51403 5.60579 5.68852 5.75408 5.94706 6.01894 6.29214 6.47066 6.56085 6.87634 7.26219 7.36766 7.54371 7.60956 7.67292 7.87085 8.30750 8.58380 9.05553 9.63932 11.14404 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041076 B = 0.005732 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.497612 B = 4883.715850 C = 5228.099918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.097 3.903 3 N -0.703 5.703 4 C 0.488 3.512 5 O -0.544 6.544 6 C 0.075 3.925 7 H 0.098 0.902 8 N -0.810 5.810 9 C -0.087 4.087 10 C -0.005 4.005 11 C -0.522 4.522 12 H 0.068 0.932 13 C 0.066 3.934 14 N -0.907 5.907 15 Si 0.879 3.121 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.260 1.260 19 C -0.175 4.175 20 C -0.172 4.172 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.404 0.596 25 H 0.350 0.650 26 H 0.335 0.665 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.008 0.992 31 H 0.262 0.738 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -11.188 5.771 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 N -0.355 5.355 4 C 0.273 3.727 5 O -0.421 6.421 6 C -0.041 4.041 7 H 0.116 0.884 8 N -0.338 5.338 9 C -0.125 4.125 10 C -0.042 4.042 11 C -0.560 4.560 12 H 0.087 0.913 13 C -0.135 4.135 14 N -0.546 5.546 15 Si 0.707 3.293 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.184 1.184 19 C -0.213 4.213 20 C -0.211 4.211 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.240 0.760 25 H 0.164 0.836 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.709 -10.727 5.271 18.953 hybrid contribution -0.469 0.043 0.477 0.671 sum -15.178 -10.684 5.748 19.431 Atomic orbital electron populations 1.21458 0.91379 1.02091 1.02855 1.20616 0.92213 0.80338 1.05857 1.45600 1.53828 1.15206 1.20857 1.22635 0.78744 0.89148 0.82147 1.90639 1.43130 1.76663 1.31648 1.21865 0.97919 0.86086 0.98236 0.88428 1.59044 1.16640 1.52382 1.05767 1.21464 0.88291 1.01364 1.01420 1.19488 0.96179 0.91965 0.96569 1.21187 0.91469 0.96464 1.46848 0.91340 1.25013 0.94651 0.99046 0.94775 1.69922 1.06037 1.28449 1.50197 0.86770 0.80557 0.83322 0.78680 1.20512 1.21597 1.18406 1.23364 1.02560 1.00080 0.95255 1.23321 1.03039 1.00883 0.93809 0.91134 0.91603 0.92149 0.76049 0.83609 0.85353 0.92317 0.92222 0.94766 0.97353 0.92841 0.88198 0.87934 0.88345 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.69 37.16 0.36 -0.87 16 2 C 0.10 1.10 2.25 -131.82 -0.30 0.80 16 3 N -0.70 -8.69 5.45 -47.61 -0.26 -8.95 16 4 C 0.49 7.39 6.92 -10.98 -0.08 7.32 16 5 O -0.54 -9.67 15.40 5.56 0.09 -9.59 16 6 C 0.07 1.18 3.15 -68.87 -0.22 0.96 16 7 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 8 N -0.81 -12.79 8.44 -5.66 -0.05 -12.83 16 9 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 10 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 11 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 12 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 15 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 19 C -0.18 -1.57 10.15 -26.69 -0.27 -1.84 16 20 C -0.17 -1.91 10.18 -26.70 -0.27 -2.18 16 21 H 0.07 0.87 7.35 -51.93 -0.38 0.49 16 22 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.40 4.24 8.83 -40.82 -0.36 3.88 16 25 H 0.35 5.67 8.58 -39.29 -0.34 5.33 16 26 H 0.33 4.54 9.06 -39.29 -0.36 4.19 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -32.86 295.38 -6.68 -39.53 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.57 Total: 8.83 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.44 Total: -11.26 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.47 Total: -49.28 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.86 -6.68 -39.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691561298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.629 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds