Wall clock time and date at job start Thu Apr 9 2020 11:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 115.55057 * 2 1 4 4 C 1.34779 * 119.99764 * 294.61964 * 3 2 1 5 5 O 1.21277 * 119.99764 * 354.96146 * 4 3 2 6 6 C 1.50699 * 120.00011 * 174.95474 * 4 3 2 7 7 H 1.09000 * 109.47034 * 320.00301 * 6 4 3 8 8 N 1.46902 * 109.47255 * 200.00584 * 6 4 3 9 9 C 1.52993 * 109.47325 * 80.00388 * 6 4 3 10 10 C 1.52999 * 109.47310 * 184.99921 * 9 6 4 11 11 C 1.50707 * 109.46837 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99805 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47132 * 89.99893 * 15 13 11 17 17 H 1.48501 * 109.46687 * 209.99614 * 15 13 11 18 18 H 1.48500 * 109.47406 * 329.99417 * 15 13 11 19 19 C 1.53001 * 117.49482 * 145.66139 * 2 1 3 20 20 C 1.52997 * 117.50292 * 214.32090 * 2 1 3 21 21 H 1.09007 * 109.46467 * 65.41634 * 1 2 3 22 22 H 1.08999 * 109.47329 * 185.41277 * 1 2 3 23 23 H 1.08997 * 109.47512 * 305.42211 * 1 2 3 24 24 H 0.96999 * 120.00015 * 114.62968 * 3 2 1 25 25 H 1.00901 * 111.00192 * 300.00247 * 8 6 4 26 26 H 1.00905 * 111.00062 * 63.94819 * 8 6 4 27 27 H 1.09002 * 109.47252 * 305.00463 * 9 6 4 28 28 H 1.09007 * 109.47115 * 65.00043 * 9 6 4 29 29 H 1.08992 * 109.47310 * 299.99885 * 10 9 6 30 30 H 1.08992 * 109.46941 * 60.00522 * 10 9 6 31 31 H 0.97000 * 120.00045 * 180.02562 * 14 13 11 32 32 H 1.08999 * 117.49940 * 215.00026 * 19 2 1 33 33 H 1.09002 * 117.50329 * 0.02998 * 19 2 1 34 34 H 1.09009 * 117.49603 * 359.97438 * 20 2 1 35 35 H 1.08996 * 117.50118 * 144.97482 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3217 0.0000 4 6 2.0138 2.1394 -1.0611 5 8 1.4354 1.7476 -2.0525 6 6 2.5667 3.5405 -1.0157 7 1 2.3944 3.9672 -0.0276 8 7 1.8951 4.3652 -2.0290 9 6 4.0694 3.5053 -1.3010 10 6 4.6536 4.9093 -1.1325 11 6 6.1337 4.8746 -1.4142 12 1 6.6099 3.9443 -1.6866 13 6 6.8797 6.0307 -1.3252 14 7 8.1713 6.0004 -1.5706 15 14 6.0558 7.6399 -0.8548 16 1 6.0890 7.8000 0.6212 17 1 6.7781 8.7704 -1.4917 18 1 4.6456 7.6286 -1.3200 19 6 2.2363 -1.1207 0.7656 20 6 2.2365 -1.1208 -0.7651 21 1 -0.3632 0.4276 -0.9346 22 1 -0.3634 -1.0231 0.0969 23 1 -0.3634 0.5956 0.8374 24 1 2.6869 1.6083 0.7636 25 1 2.0399 3.9901 -2.9545 26 1 0.9109 4.4571 -1.8261 27 1 4.5558 2.8232 -0.6036 28 1 4.2375 3.1619 -2.3219 29 1 4.1673 5.5913 -1.8299 30 1 4.4857 5.2525 -0.1118 31 1 8.6962 6.8137 -1.5076 32 1 3.1712 -0.8746 1.2691 33 1 1.6111 -1.8582 1.2688 34 1 1.6112 -1.8585 -1.2683 35 1 3.1712 -0.8747 -1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691561298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:51 Heat of formation + Delta-G solvation = -52.164047 kcal Electronic energy + Delta-G solvation = -15669.259175 eV Core-core repulsion = 13087.313533 eV Total energy + Delta-G solvation = -2581.945642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.19355 -38.67293 -36.74388 -34.78548 -33.82555 -32.28927 -29.52824 -28.40702 -25.47915 -23.52104 -22.45927 -21.42834 -20.61858 -18.98290 -18.17307 -17.50289 -16.89214 -16.28082 -16.10812 -15.64783 -15.23592 -14.86324 -14.64142 -14.11369 -13.99545 -13.54348 -13.47774 -13.27089 -12.80894 -12.56271 -12.45358 -12.00781 -11.75923 -11.73776 -11.60616 -11.31836 -11.17352 -10.92219 -10.70924 -10.03459 -9.64469 -8.25285 -6.28752 1.39985 1.43742 1.52771 1.57824 2.08516 2.41807 2.75283 3.11445 3.54005 3.67307 3.82095 3.92877 3.97342 4.08757 4.26568 4.60852 4.69454 4.70037 4.77245 4.80935 4.84628 4.95029 5.13283 5.16365 5.21111 5.48698 5.58647 5.65130 5.73713 6.06546 6.32066 6.45560 6.54408 6.79959 7.19539 7.36018 8.91733 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041076 B = 0.005732 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.497612 B = 4883.715850 C = 5228.099918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.075 3.925 3 N -0.692 5.692 4 C 0.490 3.510 5 O -0.574 6.574 6 C 0.084 3.916 7 H 0.121 0.879 8 N -0.818 5.818 9 C -0.078 4.078 10 C 0.002 3.998 11 C -0.533 4.533 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.956 5.956 15 Si 0.953 3.047 16 H -0.263 1.263 17 H -0.289 1.289 18 H -0.245 1.245 19 C -0.145 4.145 20 C -0.190 4.190 21 H 0.043 0.957 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.414 0.586 25 H 0.345 0.655 26 H 0.348 0.652 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.885 -11.082 7.652 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.012 4.012 3 N -0.344 5.344 4 C 0.275 3.725 5 O -0.453 6.453 6 C -0.031 4.031 7 H 0.138 0.862 8 N -0.347 5.347 9 C -0.117 4.117 10 C -0.035 4.035 11 C -0.571 4.571 12 H 0.045 0.955 13 C -0.193 4.193 14 N -0.597 5.597 15 Si 0.776 3.224 16 H -0.188 1.188 17 H -0.215 1.215 18 H -0.168 1.168 19 C -0.182 4.182 20 C -0.229 4.229 21 H 0.062 0.938 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.251 0.749 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.686 -10.646 7.190 21.059 hybrid contribution 0.209 -0.098 -0.132 0.265 sum -16.477 -10.744 7.059 20.899 Atomic orbital electron populations 1.21427 0.90549 1.03491 1.01785 1.20926 0.92943 0.79867 1.07470 1.45517 1.53134 1.15431 1.20299 1.22404 0.78592 0.89116 0.82365 1.90632 1.44674 1.77086 1.32869 1.21676 0.95205 0.87016 0.99237 0.86168 1.59034 1.17784 1.52326 1.05563 1.21250 0.91092 0.98905 1.00433 1.19372 0.92800 0.94410 0.96932 1.21574 0.94242 0.94997 1.46280 0.95459 1.26016 0.95172 1.03371 0.94759 1.70081 1.07949 1.29753 1.51896 0.85618 0.79886 0.77833 0.79081 1.18833 1.21508 1.16811 1.23470 1.02598 0.98547 0.93585 1.23338 1.02329 1.01508 0.95703 0.93755 0.89383 0.91236 0.74852 0.84126 0.83806 0.91700 0.94352 0.95267 0.95862 0.92635 0.87624 0.85272 0.87464 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.69 71.98 0.70 -1.41 16 2 C 0.08 1.54 2.25 3.60 0.01 1.55 16 3 N -0.69 -15.90 5.45 -422.93 -2.31 -18.20 16 4 C 0.49 14.29 6.92 87.66 0.61 14.90 16 5 O -0.57 -20.18 15.40 -3.02 -0.05 -20.23 16 6 C 0.08 2.52 3.15 44.17 0.14 2.66 16 7 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 8 N -0.82 -24.62 8.44 -171.81 -1.45 -26.07 16 9 C -0.08 -2.99 4.78 30.59 0.15 -2.84 16 10 C 0.00 0.11 3.93 29.85 0.12 0.23 16 11 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 12 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 13 C 0.00 0.18 5.47 84.66 0.46 0.64 16 14 N -0.96 -60.83 13.96 21.45 0.30 -60.53 16 15 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 19 C -0.14 -2.16 10.15 30.62 0.31 -1.85 16 20 C -0.19 -3.99 10.18 30.62 0.31 -3.68 16 21 H 0.04 1.05 7.35 -2.38 -0.02 1.04 16 22 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.41 7.70 8.83 -92.71 -0.82 6.89 16 25 H 0.35 11.01 8.58 -89.69 -0.77 10.24 16 26 H 0.35 8.81 9.06 -89.69 -0.81 8.00 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.03 1.38 6.81 -2.39 -0.02 1.37 16 30 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -71.85 295.38 0.07 -71.78 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -1.36 Total: 27.14 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.05 Total: -20.56 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.46 Total: -104.80 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -71.85 0.07 -71.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691561298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.615 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds