Wall clock time and date at job start Thu Apr 9 2020 11:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48494 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47165 * 300.00239 * 3 2 1 6 6 H 1.48506 * 109.47004 * 59.99579 * 3 2 1 7 7 C 1.37874 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47334 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00077 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00262 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99886 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.21796 * 41.92922 * 14 12 11 16 16 C 1.54480 * 110.24770 * 279.99971 * 14 12 11 17 17 C 1.54627 * 101.76536 * 266.41615 * 16 14 12 18 18 C 1.51286 * 104.19454 * 335.20174 * 17 16 14 19 19 O 1.21279 * 124.93933 * 195.99132 * 18 17 16 20 20 N 1.34413 * 110.11622 * 16.25141 * 18 17 16 21 21 H 0.96998 * 120.00666 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47116 * 59.99605 * 9 7 2 23 23 H 1.09004 * 109.46609 * 300.00088 * 9 7 2 24 24 H 1.08999 * 109.47014 * 59.99935 * 10 9 7 25 25 H 1.08995 * 109.47521 * 300.00037 * 10 9 7 26 26 H 0.96998 * 119.99915 * 0.02562 * 11 10 9 27 27 H 1.09003 * 110.97169 * 148.29929 * 16 14 12 28 28 H 1.08996 * 110.99848 * 24.54675 * 16 14 12 29 29 H 1.09004 * 110.48832 * 216.52571 * 17 16 14 30 30 H 1.08997 * 110.48725 * 93.87473 * 17 16 14 31 31 H 0.96999 * 124.35074 * 180.40767 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0023 14 6 1.4335 -7.4030 0.0018 15 1 0.5864 -7.3490 -0.6820 16 6 0.9476 -7.7398 1.4290 17 6 2.0975 -8.6321 1.9512 18 6 2.7185 -9.2081 0.6977 19 8 3.4661 -10.1626 0.6685 20 7 2.3258 -8.5046 -0.3781 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6042 0.8905 25 1 2.8721 -3.6043 -0.8894 26 1 0.5430 -4.9309 0.0011 27 1 0.0078 -8.2912 1.4012 28 1 0.8501 -6.8368 2.0317 29 1 1.7052 -9.4287 2.5834 30 1 2.8264 -8.0339 2.4978 31 1 2.5972 -8.6998 -1.2887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700865031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:01 Heat of formation + Delta-G solvation = -86.243026 kcal Electronic energy + Delta-G solvation = -15162.740452 eV Core-core repulsion = 12443.483940 eV Total energy + Delta-G solvation = -2719.256512 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.83355 -38.79524 -36.22367 -34.95057 -32.94850 -31.49571 -30.08423 -28.01487 -24.83992 -22.90220 -21.12834 -20.70648 -20.20549 -17.59955 -17.51114 -16.48954 -15.67189 -15.41520 -14.91222 -14.62087 -14.43172 -13.75833 -13.71489 -13.29919 -13.07125 -12.82006 -12.35811 -11.68245 -11.49107 -11.27537 -11.10074 -10.68401 -10.42879 -10.22007 -9.98293 -9.73351 -9.38987 -8.96853 -8.66498 -8.45052 -6.15688 -4.18711 2.47792 2.71313 3.07948 3.24444 3.32505 3.37286 3.60834 4.16571 4.24612 4.36535 4.57585 4.82786 4.98045 5.18043 5.21828 5.45106 5.56906 5.67386 6.21570 6.24216 6.58657 6.63385 6.75856 6.87061 7.43093 7.52695 7.81296 7.84287 8.12795 8.20134 8.46513 8.87425 9.46832 10.95852 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.069651 B = 0.004616 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.906473 B = 6064.090286 C = 6223.849894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.717 5.717 12 C 0.489 3.511 13 O -0.537 6.537 14 C 0.111 3.889 15 H 0.113 0.887 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.528 3.472 19 O -0.537 6.537 20 N -0.708 5.708 21 H 0.262 0.738 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.399 0.601 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -13.511 1.595 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.272 3.728 13 O -0.414 6.414 14 C 0.001 3.999 15 H 0.131 0.869 16 C -0.159 4.159 17 C -0.197 4.197 18 C 0.315 3.685 19 O -0.414 6.414 20 N -0.362 5.362 21 H 0.072 0.928 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.899 -13.860 1.701 14.092 hybrid contribution 0.002 1.119 -0.508 1.229 sum -1.897 -12.740 1.193 12.936 Atomic orbital electron populations 1.69953 1.06090 1.26854 1.50373 1.24986 0.94888 0.99433 0.94896 0.86463 0.80185 0.83304 0.77668 1.19578 1.20901 1.20890 1.21080 0.93292 0.90363 1.51396 0.92212 1.19332 0.94172 0.91096 0.97906 1.21765 0.96104 0.81341 1.00913 1.46334 1.10619 1.06421 1.73358 1.20878 0.88633 0.85685 0.77590 1.90720 1.13783 1.87497 1.49414 1.21629 0.92845 0.86014 0.99444 0.86920 1.22600 0.98680 1.01577 0.93024 1.22359 0.99113 1.01150 0.97104 1.20809 0.79546 0.81734 0.86405 1.90742 1.36311 1.27879 1.86484 1.45860 1.50361 1.29835 1.10168 0.92845 0.95896 0.95840 0.92450 0.92494 0.76720 0.88609 0.88333 0.87671 0.87395 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.02 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 10 C 0.12 2.39 5.61 -4.04 -0.02 2.37 16 11 N -0.72 -10.82 5.56 -60.30 -0.33 -11.16 16 12 C 0.49 7.21 7.01 -10.99 -0.08 7.14 16 13 O -0.54 -10.44 16.56 5.56 0.09 -10.34 16 14 C 0.11 1.10 3.93 -68.16 -0.27 0.83 16 15 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.12 -0.94 6.69 -25.10 -0.17 -1.11 16 17 C -0.16 -1.54 6.85 -26.74 -0.18 -1.72 16 18 C 0.53 7.10 8.43 -10.86 -0.09 7.00 16 19 O -0.54 -9.32 18.03 5.56 0.10 -9.22 16 20 N -0.71 -8.18 5.45 -53.88 -0.29 -8.47 16 21 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.40 4.89 8.47 -40.82 -0.35 4.55 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 0.75 7.89 -51.93 -0.41 0.34 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.41 4.38 8.96 -40.82 -0.37 4.02 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -33.95 274.42 -5.99 -39.94 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.04 Total: 2.00 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.36 Total: 1.86 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.11 Total: -44.22 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.19 Total: -19.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.95 -5.99 -39.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.302 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds