Wall clock time and date at job start Thu Apr 9 2020 11:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48494 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47165 * 300.00239 * 3 2 1 6 6 H 1.48506 * 109.47004 * 59.99579 * 3 2 1 7 7 C 1.37874 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47334 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00077 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00262 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99886 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.21796 * 41.92922 * 14 12 11 16 16 C 1.54480 * 110.24770 * 279.99971 * 14 12 11 17 17 C 1.54627 * 101.76536 * 266.41615 * 16 14 12 18 18 C 1.51286 * 104.19454 * 335.20174 * 17 16 14 19 19 O 1.21279 * 124.93933 * 195.99132 * 18 17 16 20 20 N 1.34413 * 110.11622 * 16.25141 * 18 17 16 21 21 H 0.96998 * 120.00666 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47116 * 59.99605 * 9 7 2 23 23 H 1.09004 * 109.46609 * 300.00088 * 9 7 2 24 24 H 1.08999 * 109.47014 * 59.99935 * 10 9 7 25 25 H 1.08995 * 109.47521 * 300.00037 * 10 9 7 26 26 H 0.96998 * 119.99915 * 0.02562 * 11 10 9 27 27 H 1.09003 * 110.97169 * 148.29929 * 16 14 12 28 28 H 1.08996 * 110.99848 * 24.54675 * 16 14 12 29 29 H 1.09004 * 110.48832 * 216.52571 * 17 16 14 30 30 H 1.08997 * 110.48725 * 93.87473 * 17 16 14 31 31 H 0.96999 * 124.35074 * 180.40767 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0023 14 6 1.4335 -7.4030 0.0018 15 1 0.5864 -7.3490 -0.6820 16 6 0.9476 -7.7398 1.4290 17 6 2.0975 -8.6321 1.9512 18 6 2.7185 -9.2081 0.6977 19 8 3.4661 -10.1626 0.6685 20 7 2.3258 -8.5046 -0.3781 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8720 -3.6042 0.8905 25 1 2.8721 -3.6043 -0.8894 26 1 0.5430 -4.9309 0.0011 27 1 0.0078 -8.2912 1.4012 28 1 0.8501 -6.8368 2.0317 29 1 1.7052 -9.4287 2.5834 30 1 2.8264 -8.0339 2.4978 31 1 2.5972 -8.6998 -1.2887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700865031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:00 Heat of formation + Delta-G solvation = -113.505340 kcal Electronic energy + Delta-G solvation = -15163.922634 eV Core-core repulsion = 12443.483940 eV Total energy + Delta-G solvation = -2720.438695 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 226.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.85100 -40.02986 -37.33050 -36.50913 -34.82521 -32.35359 -31.71241 -29.17151 -26.59383 -23.94926 -22.77970 -21.70716 -21.32877 -18.75857 -18.62495 -18.30206 -16.94550 -16.61636 -16.43063 -16.14426 -15.70985 -15.00692 -14.70728 -14.62947 -14.27644 -14.20375 -13.59030 -13.19642 -12.96126 -12.53316 -12.46899 -12.25281 -12.19629 -11.65778 -11.46699 -11.27116 -11.01745 -10.59425 -10.10554 -10.02080 -8.23492 -6.32962 1.40990 1.42129 1.43985 1.55098 1.56633 2.08332 2.40073 2.55862 3.11870 3.32389 3.50723 3.75936 3.95376 4.24891 4.44720 4.51233 4.53783 4.79276 4.88288 4.96932 5.05684 5.29723 5.50641 5.61986 5.68367 5.81106 5.92490 6.18379 6.62564 6.80617 7.13890 7.27798 7.36543 8.88144 Molecular weight = 226.11amu Principal moments of inertia in cm(-1) A = 0.069651 B = 0.004616 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.906473 B = 6064.090286 C = 6223.849894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.707 5.707 12 C 0.489 3.511 13 O -0.588 6.588 14 C 0.118 3.882 15 H 0.159 0.841 16 C -0.109 4.109 17 C -0.156 4.156 18 C 0.516 3.484 19 O -0.587 6.587 20 N -0.705 5.705 21 H 0.266 0.734 22 H 0.012 0.988 23 H 0.014 0.986 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.416 0.584 27 H 0.137 0.863 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -13.651 1.848 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.359 5.359 12 C 0.275 3.725 13 O -0.468 6.468 14 C 0.009 3.991 15 H 0.176 0.824 16 C -0.147 4.147 17 C -0.196 4.196 18 C 0.305 3.695 19 O -0.467 6.467 20 N -0.358 5.358 21 H 0.075 0.925 22 H 0.030 0.970 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.253 0.747 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.236 -13.994 1.945 14.494 hybrid contribution 0.407 1.160 -0.608 1.371 sum -2.829 -12.834 1.337 13.210 Atomic orbital electron populations 1.70035 1.07343 1.27893 1.51084 1.25778 0.95740 1.02791 0.94495 0.85477 0.78944 0.79214 0.77900 1.19274 1.20305 1.20223 1.21503 0.93479 0.92187 1.51390 0.92701 1.19139 0.94198 0.91419 0.96733 1.21200 0.95083 0.82510 0.99606 1.46068 1.11349 1.05123 1.73322 1.21789 0.88201 0.86866 0.75633 1.90708 1.16342 1.88269 1.51529 1.21857 0.92593 0.82307 1.02361 0.82412 1.22741 0.99329 1.01805 0.90840 1.22421 0.99523 1.01996 0.95632 1.21502 0.78904 0.81171 0.87965 1.90707 1.38506 1.30170 1.87363 1.45991 1.50096 1.29530 1.10155 0.92539 0.97005 0.96726 0.93712 0.93991 0.74683 0.84507 0.87754 0.85257 0.88496 0.74607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 13.29 21.45 0.28 -51.84 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.55 -29.46 9.11 25.60 0.23 -29.23 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.02 1.06 5.09 29.85 0.15 1.21 16 10 C 0.14 5.54 5.61 86.38 0.48 6.02 16 11 N -0.71 -20.25 5.56 -463.09 -2.57 -22.82 16 12 C 0.49 13.65 7.01 87.66 0.61 14.26 16 13 O -0.59 -22.78 16.56 -3.02 -0.05 -22.83 16 14 C 0.12 1.97 3.93 44.70 0.18 2.14 16 15 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 16 C -0.11 -1.26 6.69 31.65 0.21 -1.05 16 17 C -0.16 -2.70 6.85 30.59 0.21 -2.49 16 18 C 0.52 13.36 8.43 87.90 0.74 14.10 16 19 O -0.59 -20.55 18.03 -3.03 -0.05 -20.60 16 20 N -0.70 -15.08 5.45 -442.97 -2.41 -17.50 16 21 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 22 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.42 9.14 8.47 -92.71 -0.79 8.36 16 27 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 1.18 7.89 -2.39 -0.02 1.16 16 29 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.41 8.34 8.96 -92.71 -0.83 7.50 16 Total: -1.00 -75.01 274.42 0.04 -74.97 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.46 Total: 10.07 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 3.28 Total: 6.03 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -4.70 Total: -92.16 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.10 Total: -43.43 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.01 0.04 -74.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.533 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds