Wall clock time and date at job start Thu Apr 9 2020 11:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 C 1.53004 * 109.47053 * 240.00343 * 2 1 3 5 5 C 1.50699 * 109.47234 * 120.00574 * 2 1 3 6 6 O 1.20820 * 120.00103 * 5.06921 * 5 2 1 7 7 O 1.34228 * 119.99718 * 184.80487 * 5 2 1 8 8 C 1.45199 * 116.99694 * 175.19682 * 7 5 2 9 9 C 1.53001 * 109.46878 * 184.88407 * 8 7 5 10 10 C 1.50699 * 115.55094 * 183.93696 * 9 8 7 11 11 H 1.08002 * 120.00433 * 143.02714 * 10 9 8 12 12 C 1.37881 * 119.99961 * 323.03493 * 10 9 8 13 13 N 1.31513 * 120.00161 * 168.99291 * 12 10 9 14 14 Si 1.86797 * 119.99937 * 348.98826 * 12 10 9 15 15 H 1.48500 * 109.47155 * 95.53736 * 14 12 10 16 16 H 1.48503 * 109.47012 * 215.53979 * 14 12 10 17 17 H 1.48501 * 109.46839 * 335.53505 * 14 12 10 18 18 C 1.52997 * 117.49997 * 38.26988 * 9 8 7 19 19 C 1.52998 * 117.50075 * 329.60727 * 9 8 7 20 20 H 1.08996 * 109.47197 * 299.99542 * 1 2 3 21 21 H 1.08997 * 109.47155 * 60.00115 * 1 2 3 22 22 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47428 * 184.94229 * 3 2 1 24 24 H 1.09006 * 109.46715 * 304.94630 * 3 2 1 25 25 H 1.08996 * 109.46902 * 64.93659 * 3 2 1 26 26 H 1.09003 * 109.47297 * 304.82381 * 4 2 1 27 27 H 1.09004 * 109.47310 * 64.81731 * 4 2 1 28 28 H 1.08992 * 109.47070 * 184.82219 * 4 2 1 29 29 H 1.08998 * 109.47405 * 304.88326 * 8 7 5 30 30 H 1.08998 * 109.47482 * 64.89094 * 8 7 5 31 31 H 0.96997 * 120.00185 * 179.97438 * 13 12 10 32 32 H 1.08996 * 117.50120 * 359.97438 * 18 9 8 33 33 H 1.09000 * 117.50183 * 145.02038 * 18 9 8 34 34 H 1.09001 * 117.49984 * 214.97676 * 19 9 8 35 35 H 1.09000 * 117.49812 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2512 -1.2492 1.9782 7 8 3.3482 -0.7495 1.4926 8 6 3.7525 -1.3569 2.7479 9 6 5.2641 -1.2014 2.9262 10 6 5.8466 -1.8673 4.1462 11 1 6.8189 -2.3345 4.0941 12 6 5.1381 -1.8802 5.3290 13 7 5.5375 -2.6384 6.3265 14 14 3.6109 -0.8207 5.5146 15 1 2.4054 -1.6320 5.2085 16 1 3.5262 -0.3142 6.9080 17 1 3.6873 0.3266 4.5748 18 6 5.8978 0.1140 2.4691 19 6 6.1247 -1.1666 1.6618 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1264 1.4438 -0.0885 24 1 1.6061 1.9813 -0.8424 25 1 1.7507 1.9301 0.9309 26 1 1.6079 -1.7209 -1.2937 27 1 1.7489 -0.1599 -2.1372 28 1 3.1265 -0.7966 -1.2072 29 1 3.2368 -0.8646 3.5724 30 1 3.4949 -2.4160 2.7387 31 1 5.0394 -2.6473 7.1588 32 1 5.2379 0.8685 2.0410 33 1 6.7362 0.4976 3.0505 34 1 7.1124 -1.6249 1.7124 35 1 5.6141 -1.2548 0.7028 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276001.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:10 Heat of formation + Delta-G solvation = -85.535338 kcal Electronic energy + Delta-G solvation = -16452.912721 eV Core-core repulsion = 13837.227240 eV Total energy + Delta-G solvation = -2615.685481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86484 -39.12768 -37.09943 -36.80802 -34.45283 -29.72413 -28.26032 -28.22130 -27.41165 -24.50934 -23.10983 -21.13513 -20.74589 -18.85261 -18.45388 -17.66454 -17.28558 -16.71815 -15.73307 -15.47770 -14.97204 -14.87235 -14.66503 -14.38981 -13.73761 -13.27067 -13.11949 -13.09253 -13.02905 -12.70206 -12.64658 -12.43891 -12.10096 -11.99960 -11.96262 -11.78297 -11.52926 -11.30817 -11.15801 -10.69085 -10.31861 -8.48662 -6.44979 1.07954 1.18207 1.21450 1.26818 1.62529 2.14060 2.71786 3.31597 3.45829 3.77819 3.82564 3.91324 3.96164 4.11468 4.17099 4.44219 4.65836 4.70706 4.72907 4.80755 4.88744 4.89622 4.93257 4.94898 5.00034 5.14471 5.21704 5.30618 5.33409 5.45837 5.53805 5.56381 6.16622 6.55163 6.64316 7.14171 8.67669 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.009281 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.588176 B = 3016.297686 C = 3455.218218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.451 3.549 6 O -0.551 6.551 7 O -0.341 6.341 8 C 0.095 3.905 9 C -0.034 4.034 10 C -0.486 4.486 11 H 0.053 0.947 12 C 0.031 3.969 13 N -0.928 5.928 14 Si 0.928 3.072 15 H -0.284 1.284 16 H -0.284 1.284 17 H -0.246 1.246 18 C -0.180 4.180 19 C -0.154 4.154 20 H 0.049 0.951 21 H 0.107 0.893 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.271 0.729 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 8.984 -16.402 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.195 4.195 5 C 0.296 3.704 6 O -0.441 6.441 7 O -0.257 6.257 8 C 0.022 3.978 9 C -0.035 4.035 10 C -0.524 4.524 11 H 0.072 0.928 12 C -0.168 4.168 13 N -0.567 5.567 14 Si 0.757 3.243 15 H -0.211 1.211 16 H -0.211 1.211 17 H -0.171 1.171 18 C -0.217 4.217 19 C -0.191 4.191 20 H 0.068 0.932 21 H 0.125 0.875 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.764 8.731 -15.964 20.196 hybrid contribution -0.556 -0.279 1.221 1.371 sum -9.320 8.452 -14.743 19.381 Atomic orbital electron populations 1.21807 0.90519 1.02842 1.03608 1.20828 0.97962 0.97237 0.89627 1.21916 1.02612 0.91508 1.03627 1.21905 1.02004 1.00387 0.95204 1.25040 0.80216 0.77082 0.88103 1.90626 1.57668 1.44685 1.51152 1.86446 1.26180 1.73054 1.40007 1.23035 0.96021 0.96475 0.82291 1.19243 0.87744 1.00587 0.95959 1.20494 1.04085 1.35149 0.92641 0.92848 1.25626 0.99971 0.95519 0.95732 1.69987 1.42326 1.38607 1.05751 0.86242 0.79963 0.81172 0.76929 1.21095 1.21090 1.17107 1.23078 1.03341 0.91222 1.04100 1.22795 1.00278 1.01356 0.94664 0.93207 0.87483 0.92845 0.91142 0.87547 0.93338 0.92535 0.87498 0.91577 0.93484 0.92638 0.91921 0.88860 0.89864 0.89852 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 7.78 71.98 0.56 -2.07 16 2 C -0.06 -1.28 0.97 -52.92 -0.05 -1.33 16 3 C -0.14 -2.60 8.33 71.98 0.60 -2.00 16 4 C -0.14 -2.46 8.45 71.98 0.61 -1.85 16 5 C 0.45 16.01 6.55 71.24 0.47 16.48 16 6 O -0.55 -23.73 15.72 21.98 0.35 -23.38 16 7 O -0.34 -13.15 8.28 -51.39 -0.43 -13.57 16 8 C 0.09 4.43 4.24 71.98 0.31 4.73 16 9 C -0.03 -1.64 1.81 -52.93 -0.10 -1.74 16 10 C -0.49 -27.93 9.57 25.60 0.25 -27.69 16 11 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 12 C 0.03 1.85 5.43 84.66 0.46 2.31 16 13 N -0.93 -57.73 13.96 21.45 0.30 -57.43 16 14 Si 0.93 47.03 24.24 68.60 1.66 48.69 16 15 H -0.28 -14.72 7.11 99.48 0.71 -14.01 16 16 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 17 H -0.25 -11.75 6.37 99.48 0.63 -11.12 16 18 C -0.18 -7.28 9.66 30.62 0.30 -6.98 16 19 C -0.15 -6.06 9.63 30.62 0.29 -5.77 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.20 8.05 -2.39 -0.02 1.18 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 29 H 0.05 2.35 2.49 -2.39 -0.01 2.34 16 30 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 32 H 0.09 3.39 7.79 -2.39 -0.02 3.37 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.10 3.57 7.53 -2.39 -0.02 3.55 16 Total: -1.00 -69.03 286.96 6.55 -62.48 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.98 Total: 9.10 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.69 Total: -25.89 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.30 Total: -57.43 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.08 Total: -36.95 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.66 Total: 48.69 kcal Total: -69.03 6.55 -62.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276001.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.052 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds