Wall clock time and date at job start Thu Apr 9 2020 11:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86804 * 119.99985 * 2 1 4 4 H 1.48501 * 109.46704 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47493 * 119.99854 * 3 2 1 7 7 C 1.38753 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00020 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00352 * 0.02562 * 7 2 1 10 10 C 1.34306 * 117.00334 * 179.97438 * 9 7 2 11 11 O 1.21209 * 119.99964 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00040 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.47279 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47400 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47126 * 180.02562 * 14 13 12 16 16 C 1.54961 * 110.92578 * 71.54077 * 15 14 13 17 17 C 1.54270 * 104.16191 * 156.29427 * 16 15 14 18 18 C 1.53869 * 106.63967 * 336.44607 * 17 16 15 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47508 * 59.99908 * 12 10 9 22 22 H 1.09000 * 109.47087 * 299.99586 * 12 10 9 23 23 H 1.09001 * 109.47169 * 60.00300 * 13 12 10 24 24 H 1.09000 * 109.46864 * 299.99895 * 13 12 10 25 25 H 1.08995 * 109.46922 * 59.99869 * 14 13 12 26 26 H 1.09000 * 109.47141 * 299.99866 * 14 13 12 27 27 H 1.09001 * 110.67554 * 308.23161 * 15 14 13 28 28 H 1.08997 * 110.47708 * 37.64024 * 16 15 14 29 29 H 1.09002 * 110.53308 * 274.97416 * 16 15 14 30 30 H 1.09002 * 110.03399 * 217.13605 * 17 16 15 31 31 H 1.08995 * 110.02943 * 95.75505 * 17 16 15 32 32 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 33 33 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 34 34 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 35 35 H 1.09000 * 110.48806 * 264.79985 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2756 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 6 2.4348 -5.9485 0.0004 14 6 1.7403 -7.3118 0.0016 15 6 2.7940 -8.4210 0.0015 16 6 3.5084 -8.5059 1.3739 17 6 4.0375 -9.9537 1.4352 18 6 3.1593 -10.7844 0.4833 19 6 2.1259 -9.8129 -0.1236 20 1 -0.4850 0.8400 -0.0004 21 1 0.7579 -4.9300 -0.8886 22 1 0.7587 -4.9295 0.8914 23 1 3.0582 -5.8581 0.8899 24 1 3.0569 -5.8581 -0.8901 25 1 1.1165 -7.4026 -0.8876 26 1 1.1185 -7.4020 0.8923 27 1 3.5161 -8.2658 -0.8002 28 1 2.8018 -8.3234 2.1835 29 1 4.3341 -7.7958 1.4197 30 1 3.9545 -10.3389 2.4515 31 1 5.0766 -9.9856 1.1079 32 1 3.7720 -11.2188 -0.3066 33 1 2.6506 -11.5733 1.0373 34 1 1.9429 -10.0555 -1.1703 35 1 1.1950 -9.8436 0.4426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745601788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:17 Heat of formation + Delta-G solvation = -122.622084 kcal Electronic energy + Delta-G solvation = -15208.993193 eV Core-core repulsion = 12591.699510 eV Total energy + Delta-G solvation = -2617.293683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00664 -38.39809 -35.41424 -33.86251 -32.08059 -29.93509 -28.74677 -26.17607 -24.72444 -21.89768 -20.37328 -19.87873 -19.45328 -17.64919 -16.43581 -15.90211 -15.32797 -15.07157 -14.40187 -14.27188 -14.06368 -13.41853 -13.14586 -12.50706 -12.36082 -11.90911 -11.59049 -11.37893 -11.25373 -11.12752 -11.06715 -10.65409 -10.56421 -10.51199 -10.49323 -10.36436 -10.28519 -10.18177 -9.74107 -8.91932 -8.52191 -6.35466 -4.03295 3.17222 3.21494 3.25858 3.62983 3.99895 4.45416 4.56564 4.60804 4.75740 5.15181 5.18804 5.29088 5.35679 5.43564 5.53172 5.55799 5.60292 5.73688 5.74092 5.84109 5.89176 5.99502 6.07109 6.09522 6.11946 6.17368 6.28154 6.40673 6.57852 6.68832 6.92236 7.45119 8.02080 8.79873 9.13581 9.94344 10.82907 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.076578 B = 0.004161 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.553801 B = 6728.078901 C = 6953.219298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.094 0.906 9 O -0.218 6.218 10 C 0.396 3.604 11 O -0.559 6.559 12 C -0.104 4.104 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.092 4.092 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.121 4.121 20 H 0.269 0.731 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.730 -17.154 0.935 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.111 0.889 9 O -0.126 6.126 10 C 0.243 3.757 11 O -0.457 6.457 12 C -0.142 4.142 13 C -0.140 4.140 14 C -0.149 4.149 15 C -0.110 4.110 16 C -0.159 4.159 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.159 4.159 20 H 0.079 0.921 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.848 -16.968 0.939 17.231 hybrid contribution 0.391 0.819 0.004 0.907 sum 3.239 -16.149 0.943 16.497 Atomic orbital electron populations 1.69983 1.05983 1.27654 1.46928 1.25320 0.95793 0.98825 0.96324 0.85757 0.78619 0.79559 0.79298 1.19535 1.20410 1.19530 1.21165 0.92310 0.80085 1.52354 0.88870 1.83887 1.39462 1.13465 1.75761 1.23334 0.86770 0.87435 0.78155 1.90536 1.15902 1.88239 1.51007 1.21119 0.98919 0.89957 1.04172 1.21354 0.97373 0.91874 1.03427 1.21611 0.97500 0.93761 1.02003 1.22157 0.97221 0.93975 0.97674 1.22464 1.00105 0.96029 0.97321 1.22140 0.99273 0.95674 0.99276 1.22125 0.97524 0.97983 0.98623 1.22426 0.98274 0.94654 1.00518 0.92120 0.89357 0.89358 0.91315 0.91470 0.91899 0.91872 0.90637 0.91538 0.91452 0.92190 0.92111 0.92170 0.92223 0.91920 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 3 Si 0.94 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -11.67 9.65 30.92 0.30 -11.38 16 8 H 0.09 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.22 -6.46 9.75 -20.70 -0.20 -6.66 16 10 C 0.40 10.04 7.91 36.00 0.28 10.33 16 11 O -0.56 -15.39 15.22 -19.05 -0.29 -15.68 16 12 C -0.10 -1.89 5.81 -27.89 -0.16 -2.05 16 13 C -0.10 -1.60 4.40 -26.73 -0.12 -1.72 16 14 C -0.11 -1.33 4.72 -26.73 -0.13 -1.45 16 15 C -0.09 -1.00 2.86 -88.59 -0.25 -1.25 16 16 C -0.12 -1.30 5.71 -25.03 -0.14 -1.45 16 17 C -0.13 -1.16 6.80 -25.61 -0.17 -1.34 16 18 C -0.12 -1.08 6.80 -25.62 -0.17 -1.26 16 19 C -0.12 -1.13 6.27 -25.07 -0.16 -1.29 16 20 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 22 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.07 1.13 7.61 -51.93 -0.40 0.74 16 24 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.72 8.00 -51.93 -0.42 0.30 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 29 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -33.04 292.18 -6.96 -39.99 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.78 Total: -1.78 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.82 Total: -11.77 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.76 Total: -25.27 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.49 Total: -22.34 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.04 -6.96 -39.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745601788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.629 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds