Wall clock time and date at job start Thu Apr 9 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 115.54875 * 2 1 4 4 C 1.53075 * 117.51333 * 214.27533 * 2 1 3 5 5 C 1.53003 * 117.49884 * 145.66635 * 2 1 3 6 6 H 1.08998 * 117.49974 * 214.99889 * 5 2 1 7 7 C 1.50706 * 117.49838 * 0.02562 * 5 2 1 8 8 O 1.20824 * 120.00104 * 359.90818 * 7 5 2 9 9 O 1.34230 * 119.99717 * 179.91374 * 7 5 2 10 10 C 1.45199 * 116.99614 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46778 * 60.00380 * 17 15 13 19 19 H 1.48503 * 109.47134 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47402 * 300.00322 * 17 15 13 21 21 H 1.09000 * 109.47039 * 274.32663 * 1 2 3 22 22 H 1.08993 * 109.47135 * 34.33374 * 1 2 3 23 23 H 1.09001 * 109.46952 * 154.33579 * 1 2 3 24 24 H 1.09003 * 109.46897 * 205.67129 * 3 2 1 25 25 H 1.09004 * 109.47054 * 325.66542 * 3 2 1 26 26 H 1.08990 * 109.47465 * 85.66983 * 3 2 1 27 27 H 1.09000 * 117.49697 * 145.03585 * 4 2 1 28 28 H 1.09002 * 117.51567 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47177 * 299.99820 * 10 9 7 30 30 H 1.09001 * 109.47399 * 59.99991 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00058 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99688 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2372 -1.1219 -0.7646 5 6 2.2365 -1.1207 0.7655 6 1 3.1714 -0.8746 1.2689 7 6 1.3720 -2.1404 1.4612 8 8 0.1684 -2.0528 1.4028 9 8 1.9393 -3.1460 2.1459 10 6 1.0453 -4.0907 2.7913 11 6 1.8679 -5.1575 3.5165 12 6 0.9260 -6.1527 4.1971 13 6 1.7362 -7.2038 4.9110 14 1 2.8152 -7.1657 4.8825 15 6 1.1002 -8.2137 5.6014 16 7 -0.2137 -8.2599 5.6366 17 14 2.1046 -9.5170 6.4856 18 1 2.9647 -8.8696 7.5086 19 1 1.1903 -10.4829 7.1463 20 1 2.9573 -10.2350 5.5045 21 1 -0.3633 0.0775 1.0247 22 1 -0.3633 0.8486 -0.5796 23 1 -0.3633 -0.9263 -0.4451 24 1 3.1822 1.3087 -0.4452 25 1 1.5809 2.0742 -0.5796 26 1 2.2766 1.7416 1.0246 27 1 3.1724 -0.8762 -1.2677 28 1 1.6124 -1.8602 -1.2672 29 1 0.4178 -3.5641 3.5104 30 1 0.4156 -4.5668 2.0396 31 1 2.4951 -5.6841 2.7971 32 1 2.4980 -4.6819 4.2681 33 1 0.2991 -5.6259 4.9166 34 1 0.2957 -6.6285 3.4458 35 1 -0.6612 -8.9705 6.1220 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751802179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:31 Heat of formation + Delta-G solvation = -87.219847 kcal Electronic energy + Delta-G solvation = -15145.123582 eV Core-core repulsion = 12529.365055 eV Total energy + Delta-G solvation = -2615.758527 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57072 -38.18640 -36.04659 -33.97312 -31.71075 -29.81648 -27.64473 -27.21728 -24.81095 -22.91040 -20.73935 -20.32482 -19.09190 -17.54430 -16.50336 -16.21695 -15.74839 -14.79405 -14.47065 -14.05768 -14.04001 -13.71319 -13.02681 -12.70766 -12.31970 -12.15764 -12.13124 -11.92913 -11.79642 -11.46428 -10.94570 -10.65098 -10.62686 -10.45701 -10.35323 -10.20566 -9.89318 -9.70293 -9.44789 -9.16633 -8.38017 -6.02949 -4.06117 2.24355 2.84620 3.32898 3.37057 3.39750 3.50865 4.36715 4.43274 4.51452 4.60601 4.83924 5.06172 5.32823 5.35348 5.42668 5.46224 5.59571 5.64983 5.68959 5.72618 5.78478 5.84242 5.98171 6.03234 6.30485 6.55343 6.56514 6.88393 7.00382 7.60598 7.71955 7.95150 8.01670 8.36648 8.99937 9.58073 11.08504 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.076258 B = 0.003967 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.084588 B = 7056.183532 C = 7268.889154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.116 4.116 4 C -0.144 4.144 5 C -0.164 4.164 6 H 0.133 0.867 7 C 0.486 3.514 8 O -0.508 6.508 9 O -0.356 6.356 10 C 0.069 3.931 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 16.665 -11.682 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.173 4.173 4 C -0.181 4.181 5 C -0.183 4.183 6 H 0.151 0.849 7 C 0.329 3.671 8 O -0.397 6.397 9 O -0.272 6.272 10 C -0.004 4.004 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.225 16.539 -11.595 20.636 hybrid contribution 0.406 -0.939 0.668 1.222 sum 4.630 15.601 -10.926 19.601 Atomic orbital electron populations 1.21417 0.90532 1.01678 1.02830 1.21722 0.96145 0.90706 1.00983 1.21403 1.00024 0.93481 1.02418 1.23303 1.03054 1.01273 0.90459 1.21922 1.01913 0.98865 0.95616 0.84940 1.22508 0.87269 0.80814 0.76511 1.90651 1.16010 1.74091 1.58912 1.86487 1.42736 1.36503 1.61476 1.23492 0.92375 0.88713 0.95841 1.21762 0.99466 0.94803 0.98639 1.19047 0.94292 0.92637 0.95321 1.21143 0.93100 1.09872 1.31949 0.92472 1.25033 0.94938 0.98006 0.96488 1.69958 1.07554 1.33397 1.42494 0.86597 0.79877 0.81300 0.79876 1.20165 1.21256 1.20173 0.91266 0.92936 0.91601 0.92089 0.91477 0.91781 0.87350 0.88023 0.91552 0.91591 0.92161 0.92168 0.96238 0.96247 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.09 37.16 0.30 -0.90 16 2 C -0.10 -0.94 2.70 -154.47 -0.42 -1.36 16 3 C -0.12 -0.85 9.85 37.16 0.37 -0.48 16 4 C -0.14 -1.36 9.53 -26.69 -0.25 -1.61 16 5 C -0.16 -1.90 6.02 -91.77 -0.55 -2.45 16 6 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 7 C 0.49 7.67 7.72 36.01 0.28 7.95 16 8 O -0.51 -9.00 12.86 -18.75 -0.24 -9.24 16 9 O -0.36 -6.24 10.22 -39.26 -0.40 -6.64 16 10 C 0.07 1.31 5.47 37.16 0.20 1.51 16 11 C -0.11 -2.32 5.53 -26.74 -0.15 -2.47 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H 0.07 0.88 7.26 -51.93 -0.38 0.51 16 22 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 23 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 24 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 25 H 0.07 0.43 7.92 -51.93 -0.41 0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.11 0.77 8.05 -51.93 -0.42 0.35 16 28 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 29 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -31.10 296.99 -6.96 -38.06 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -5.73 Total: -4.04 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.77 Total: -12.98 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.64 Total: -15.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.10 -6.96 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751802179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.158 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds