Wall clock time and date at job start Thu Apr 9 2020 11:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 C 1.52999 * 109.47004 * 179.97438 * 13 11 10 15 15 O 1.42907 * 110.01872 * 64.29628 * 14 13 11 16 16 C 1.54267 * 110.03274 * 302.90715 * 14 13 11 17 17 C 1.54961 * 104.15926 * 217.13250 * 16 14 13 18 18 C 1.54893 * 102.77954 * 37.88834 * 17 16 14 19 19 C 1.53879 * 110.03538 * 185.68657 * 14 13 11 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 25 25 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 26 26 H 0.96701 * 113.99869 * 300.70298 * 15 14 13 27 27 H 1.08997 * 110.48331 * 335.78197 * 16 14 13 28 28 H 1.09002 * 110.48683 * 98.42686 * 16 14 13 29 29 H 1.09002 * 110.72356 * 279.57332 * 17 16 14 30 30 H 1.08999 * 110.76396 * 156.21895 * 17 16 14 31 31 H 1.08991 * 110.48825 * 203.40128 * 18 17 16 32 32 H 1.09005 * 110.48749 * 80.75480 * 18 17 16 33 33 H 1.08997 * 110.03473 * 238.56908 * 19 14 13 34 34 H 1.08998 * 110.02786 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 6 1.9685 -7.3537 -0.0138 15 8 1.2191 -7.4814 -1.2239 16 6 1.0227 -7.4226 1.2031 17 6 1.0804 -8.9070 1.6443 18 6 2.5687 -9.2733 1.4211 19 6 2.9508 -8.5300 0.1244 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 3.3599 -5.9671 -0.8985 25 1 3.3601 -5.9748 0.8814 26 1 0.5741 -6.7746 -1.3635 27 1 1.3809 -6.7732 2.0018 28 1 0.0081 -7.1490 0.9137 29 1 0.4333 -9.5210 1.0179 30 1 0.8112 -9.0083 2.6957 31 1 2.6814 -10.3495 1.2913 32 1 3.1771 -8.9229 2.2550 33 1 2.8554 -9.1987 -0.7311 34 1 3.9724 -8.1568 0.1955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787630090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:12 Heat of formation + Delta-G solvation = -115.537367 kcal Electronic energy + Delta-G solvation = -15973.593154 eV Core-core repulsion = 13291.180777 eV Total energy + Delta-G solvation = -2682.412377 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.88495 -37.80612 -34.64599 -34.14566 -32.40754 -30.67275 -28.67359 -27.40475 -25.30201 -22.50724 -20.87583 -19.90451 -19.54728 -17.23096 -16.26675 -15.90407 -15.53136 -15.09293 -14.92611 -14.65620 -14.02192 -13.40031 -12.93144 -12.81523 -12.41962 -12.01553 -11.93762 -11.60970 -11.27471 -11.12363 -11.05408 -10.94481 -10.83864 -10.60677 -10.45259 -10.32790 -9.63494 -9.44655 -9.03241 -8.76706 -7.94217 -6.19617 -4.26952 3.23274 3.28275 3.28740 3.29653 4.01291 4.32182 4.40444 4.64145 4.78522 4.94919 5.16468 5.19656 5.40789 5.41122 5.55854 5.65677 5.70417 5.80597 5.88612 5.90286 6.10159 6.11170 6.21040 6.40356 6.55955 7.25445 7.36735 7.47200 7.61926 7.93259 8.02623 8.56532 8.72997 9.03221 9.39795 10.90503 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061331 B = 0.005124 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.426572 B = 5463.189050 C = 5567.698897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.710 5.710 11 C 0.499 3.501 12 O -0.560 6.560 13 C -0.171 4.171 14 C 0.150 3.850 15 O -0.565 6.565 16 C -0.138 4.138 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.114 4.114 20 H 0.267 0.733 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.391 0.609 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.387 0.613 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -14.220 1.999 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.284 3.716 12 O -0.441 6.441 13 C -0.211 4.211 14 C 0.108 3.892 15 O -0.375 6.375 16 C -0.176 4.176 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.151 4.151 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.223 0.777 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.239 0.761 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.044 -14.722 1.932 16.031 hybrid contribution 0.630 1.712 0.089 1.827 sum 6.675 -13.010 2.021 14.761 Atomic orbital electron populations 1.69959 1.06121 1.27469 1.48729 1.24948 0.94913 0.99460 0.94619 0.86471 0.79427 0.82286 0.78707 1.20046 1.21025 1.20057 1.21192 0.93226 0.90505 1.53476 0.91975 1.19114 0.88316 0.82010 0.97740 1.46508 1.11191 1.06287 1.71762 1.20483 0.89479 0.84482 0.77138 1.90587 1.16947 1.84755 1.51786 1.22559 0.99430 0.94668 1.04484 1.21450 0.90525 0.91917 0.85286 1.86357 1.55982 1.54340 1.40846 1.23018 1.01464 0.95661 0.97409 1.22530 0.96156 0.96964 1.00692 1.22354 0.96837 0.99735 0.97165 1.22168 0.97838 0.96455 0.98644 0.92353 0.95486 0.95519 0.77653 0.88774 0.88649 0.76139 0.91500 0.89696 0.91472 0.91853 0.91696 0.91628 0.90474 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 10 N -0.71 -14.58 5.55 -61.47 -0.34 -14.92 16 11 C 0.50 9.46 7.30 -10.99 -0.08 9.38 16 12 O -0.56 -12.26 12.51 -9.15 -0.11 -12.37 16 13 C -0.17 -2.40 4.63 -27.88 -0.13 -2.53 16 14 C 0.15 2.12 0.98 -89.50 -0.09 2.03 16 15 O -0.57 -9.14 12.89 -49.94 -0.64 -9.78 16 16 C -0.14 -1.99 4.65 -25.03 -0.12 -2.11 16 17 C -0.13 -1.47 6.91 -24.70 -0.17 -1.64 16 18 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 19 C -0.11 -1.30 6.27 -25.61 -0.16 -1.46 16 20 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 21 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.39 6.52 6.96 45.56 0.32 6.84 16 27 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 28 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 34 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 279.73 15.07 4.22 4.22 Total: -1.00 -30.41 279.73 -7.06 -37.46 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.53 Total: 9.53 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.36 Total: -4.63 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.40 Total: -40.12 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.76 Total: -22.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.41 -7.06 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.075 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds