Wall clock time and date at job start Thu Apr 9 2020 11:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 C 1.52999 * 109.47004 * 179.97438 * 13 11 10 15 15 O 1.42907 * 110.01872 * 64.29628 * 14 13 11 16 16 C 1.54267 * 110.03274 * 302.90715 * 14 13 11 17 17 C 1.54961 * 104.15926 * 217.13250 * 16 14 13 18 18 C 1.54893 * 102.77954 * 37.88834 * 17 16 14 19 19 C 1.53879 * 110.03538 * 185.68657 * 14 13 11 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.09003 * 109.47112 * 299.99065 * 13 11 10 25 25 H 1.08993 * 109.47916 * 59.99687 * 13 11 10 26 26 H 0.96701 * 113.99869 * 300.70298 * 15 14 13 27 27 H 1.08997 * 110.48331 * 335.78197 * 16 14 13 28 28 H 1.09002 * 110.48683 * 98.42686 * 16 14 13 29 29 H 1.09002 * 110.72356 * 279.57332 * 17 16 14 30 30 H 1.08999 * 110.76396 * 156.21895 * 17 16 14 31 31 H 1.08991 * 110.48825 * 203.40128 * 18 17 16 32 32 H 1.09005 * 110.48749 * 80.75480 * 18 17 16 33 33 H 1.08997 * 110.03473 * 238.56908 * 19 14 13 34 34 H 1.08998 * 110.02786 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 6 1.9685 -7.3537 -0.0138 15 8 1.2191 -7.4814 -1.2239 16 6 1.0227 -7.4226 1.2031 17 6 1.0804 -8.9070 1.6443 18 6 2.5687 -9.2733 1.4211 19 6 2.9508 -8.5300 0.1244 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 3.3599 -5.9671 -0.8985 25 1 3.3601 -5.9748 0.8814 26 1 0.5741 -6.7746 -1.3635 27 1 1.3809 -6.7732 2.0018 28 1 0.0081 -7.1490 0.9137 29 1 0.4333 -9.5210 1.0179 30 1 0.8112 -9.0083 2.6957 31 1 2.6814 -10.3495 1.2913 32 1 3.1771 -8.9229 2.2550 33 1 2.8554 -9.1987 -0.7311 34 1 3.9724 -8.1568 0.1955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787630090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:11 Heat of formation + Delta-G solvation = -137.821776 kcal Electronic energy + Delta-G solvation = -15974.559479 eV Core-core repulsion = 13291.180777 eV Total energy + Delta-G solvation = -2683.378702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24128 -39.17160 -36.16808 -35.63929 -34.37416 -31.96634 -29.66375 -29.26011 -26.61096 -24.43613 -21.88914 -21.47409 -20.66811 -18.98273 -17.67208 -17.47188 -16.95656 -16.57176 -16.43826 -16.01442 -15.57072 -14.53750 -14.46706 -14.30459 -13.98591 -13.55135 -13.49651 -12.96101 -12.88062 -12.68082 -12.34471 -12.25276 -11.99513 -11.94850 -11.59702 -11.49851 -11.42314 -10.81368 -10.79655 -10.62590 -9.82851 -8.30256 -6.47027 1.42564 1.46334 1.54617 1.74570 2.31519 2.58265 3.04742 3.28275 3.60697 3.71450 3.86858 4.13714 4.28876 4.37348 4.55877 4.59021 4.72585 4.84723 4.92596 5.04375 5.07006 5.12635 5.18147 5.23295 5.23696 5.41829 5.48578 5.50530 5.68290 5.84082 6.63495 6.73004 6.88662 7.22580 7.48002 8.81594 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061331 B = 0.005124 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.426572 B = 5463.189050 C = 5567.698897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.494 3.506 12 O -0.594 6.594 13 C -0.157 4.157 14 C 0.139 3.861 15 O -0.576 6.576 16 C -0.142 4.142 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.109 4.109 20 H 0.269 0.731 21 H -0.012 1.012 22 H -0.013 1.013 23 H 0.408 0.592 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.379 0.621 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -14.751 2.434 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.143 3.857 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.476 6.476 13 C -0.197 4.197 14 C 0.098 3.902 15 O -0.385 6.385 16 C -0.180 4.180 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.147 4.147 20 H 0.077 0.923 21 H 0.006 0.994 22 H 0.005 0.995 23 H 0.243 0.757 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.229 0.771 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.112 -15.297 2.370 17.962 hybrid contribution -0.386 1.810 -0.041 1.851 sum 8.726 -13.487 2.329 16.232 Atomic orbital electron populations 1.70124 1.08273 1.28634 1.49917 1.26052 0.95748 1.03884 0.93810 0.85224 0.77933 0.76669 0.79496 1.18698 1.21109 1.18632 1.21607 0.94295 0.90713 1.53025 0.89898 1.18526 0.88703 0.84376 0.94064 1.46253 1.11177 1.05706 1.72573 1.21462 0.90000 0.84945 0.75363 1.90587 1.19110 1.85237 1.52711 1.22583 0.98301 0.91730 1.07048 1.21796 0.90875 0.93323 0.84212 1.86357 1.56026 1.54116 1.42013 1.22984 0.99701 0.97648 0.97641 1.22526 0.97810 0.94643 1.01175 1.22370 0.95245 1.00789 0.97016 1.22211 0.98150 0.95130 0.99188 0.92251 0.99434 0.99466 0.75658 0.86520 0.85379 0.77065 0.92065 0.93116 0.92088 0.90731 0.89899 0.89998 0.90788 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 2 C 0.00 0.26 5.46 84.66 0.46 0.73 16 3 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -30.18 9.28 25.60 0.24 -29.95 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 14.45 5.43 85.63 0.46 14.92 16 10 N -0.71 -29.11 5.55 -466.78 -2.59 -31.70 16 11 C 0.49 18.79 7.30 87.66 0.64 19.43 16 12 O -0.59 -27.20 12.51 11.02 0.14 -27.07 16 13 C -0.16 -4.04 4.63 29.85 0.14 -3.91 16 14 C 0.14 3.72 0.98 -10.07 -0.01 3.71 16 15 O -0.58 -18.60 12.89 -134.92 -1.74 -20.34 16 16 C -0.14 -4.08 4.65 31.69 0.15 -3.93 16 17 C -0.12 -2.72 6.91 31.91 0.22 -2.50 16 18 C -0.12 -1.97 6.83 31.67 0.22 -1.75 16 19 C -0.11 -2.13 6.27 31.32 0.20 -1.94 16 20 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 21 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 22 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 23 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 24 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.38 13.35 6.96 -74.06 -0.52 12.84 16 27 H 0.06 1.79 7.78 -2.39 -0.02 1.77 16 28 H 0.05 1.78 7.18 -2.39 -0.02 1.76 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.52 7.95 -2.39 -0.02 1.50 16 34 H 0.10 1.43 7.67 -2.39 -0.02 1.41 16 Total: -1.00 -68.55 279.73 0.65 -67.90 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.19 Total: 28.08 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 2.71 Total: -5.18 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.30 Total: -87.44 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.60 Total: -47.41 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.55 0.65 -67.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.917 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds