Wall clock time and date at job start Thu Apr 9 2020 11:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46895 * 110.99967 * 2 1 4 4 C 1.50706 * 109.47182 * 293.94974 * 3 2 1 5 5 H 1.08000 * 119.99302 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72677 * 4 3 2 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 C 1.46907 * 110.99599 * 123.95100 * 2 1 3 13 13 H 1.09005 * 110.32159 * 186.74942 * 12 2 1 14 14 C 1.54487 * 110.37097 * 64.50961 * 12 2 1 15 15 C 1.54775 * 102.05090 * 225.86931 * 14 12 2 16 16 C 1.52995 * 110.36503 * 268.00747 * 15 14 12 17 17 C 1.53003 * 110.57285 * 145.57167 * 15 14 12 18 18 O 1.45830 * 104.49255 * 26.74019 * 15 14 12 19 19 C 1.34064 * 109.90800 * 329.45678 * 18 15 14 20 20 O 1.20827 * 125.09907 * 200.83852 * 19 18 15 21 21 H 1.08998 * 109.47218 * 60.00734 * 1 2 3 22 22 H 1.09004 * 109.47214 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47566 * 300.00424 * 1 2 3 24 24 H 1.09001 * 109.47613 * 173.95320 * 3 2 1 25 25 H 1.08998 * 109.47678 * 53.95215 * 3 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09004 * 110.86796 * 343.98244 * 14 12 2 28 28 H 1.08998 * 110.87169 * 107.64828 * 14 12 2 29 29 H 1.09000 * 109.47422 * 176.49335 * 16 15 14 30 30 H 1.09000 * 109.47093 * 296.48809 * 16 15 14 31 31 H 1.08999 * 109.47136 * 56.49025 * 16 15 14 32 32 H 1.09000 * 109.47119 * 303.38419 * 17 15 14 33 33 H 1.08993 * 109.47098 * 63.39131 * 17 15 14 34 34 H 1.09001 * 109.46961 * 183.38924 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5113 -2.0485 6 6 2.0223 3.3510 -1.5265 7 7 1.7091 3.9409 -2.6595 8 14 2.9882 4.2805 -0.2256 9 1 4.4421 4.0740 -0.4466 10 1 2.6746 5.7292 -0.3169 11 1 2.6159 3.7775 1.1211 12 6 1.9954 -0.7660 1.1377 13 1 3.0787 -0.6606 1.1963 14 6 1.6062 -2.2555 1.0093 15 6 1.1106 -2.5843 2.4383 16 6 2.2613 -3.1243 3.2898 17 6 -0.0369 -3.5952 2.3900 18 8 0.6427 -1.3075 2.9651 19 6 1.3508 -0.3045 2.4267 20 8 1.4583 0.8021 2.8998 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.0797 1.3445 0.1083 25 1 1.5611 1.9274 0.8308 26 1 1.9799 4.8584 -2.8197 27 1 0.8057 -2.3863 0.2810 28 1 2.4731 -2.8623 0.7480 29 1 1.9119 -3.2921 4.3085 30 1 2.6154 -4.0647 2.8677 31 1 3.0765 -2.4007 3.2998 32 1 -0.8404 -3.2032 1.7664 33 1 0.3236 -4.5343 1.9705 34 1 -0.4115 -3.7680 3.3990 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795667273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:13 Heat of formation + Delta-G solvation = -75.172985 kcal Electronic energy + Delta-G solvation = -16669.548828 eV Core-core repulsion = 13988.886782 eV Total energy + Delta-G solvation = -2680.662046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23242 -37.60127 -36.42916 -33.63042 -32.52808 -30.17164 -27.90357 -27.47472 -25.60423 -23.65182 -21.49057 -21.02614 -19.39138 -17.08470 -16.59790 -16.44166 -15.74786 -15.15422 -14.48338 -14.13218 -13.90600 -13.72864 -13.15590 -12.97361 -12.58324 -12.43780 -12.36387 -11.98559 -11.85123 -11.66090 -11.33512 -11.12582 -10.95078 -10.50152 -10.42451 -10.33568 -10.19863 -9.83600 -9.31542 -8.55864 -7.56782 -6.04974 -4.03161 2.31368 3.26875 3.32715 3.40407 3.50525 4.05737 4.33266 4.45121 4.46226 4.60970 4.83611 4.94476 5.26269 5.29319 5.30729 5.47302 5.47918 5.57757 5.76634 5.79500 5.88054 5.89900 6.04097 6.11208 6.56995 6.82133 6.90922 7.05108 7.46618 7.65306 7.73793 7.90339 8.59438 9.00650 9.56497 11.07560 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.045571 B = 0.007705 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.276266 B = 3633.320061 C = 3909.330330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.495 5.495 3 C 0.152 3.848 4 C -0.512 4.512 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.867 3.133 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.261 1.261 12 C 0.021 3.979 13 H 0.116 0.884 14 C -0.138 4.138 15 C 0.100 3.900 16 C -0.163 4.163 17 C -0.141 4.141 18 O -0.348 6.348 19 C 0.450 3.550 20 O -0.451 6.451 21 H 0.090 0.910 22 H 0.054 0.946 23 H 0.017 0.983 24 H 0.026 0.974 25 H 0.009 0.991 26 H 0.264 0.736 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -16.456 9.638 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.220 5.220 3 C 0.026 3.974 4 C -0.550 4.550 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.538 5.538 8 Si 0.694 3.306 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.185 1.185 12 C -0.090 4.090 13 H 0.134 0.866 14 C -0.176 4.176 15 C 0.063 3.937 16 C -0.221 4.221 17 C -0.198 4.198 18 O -0.265 6.265 19 C 0.288 3.712 20 O -0.332 6.332 21 H 0.108 0.892 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.217 -15.952 9.494 18.565 hybrid contribution 0.358 1.099 1.283 1.727 sum 0.141 -14.853 10.778 18.352 Atomic orbital electron populations 1.22442 0.87750 1.00102 1.02142 1.62448 1.07958 1.17796 1.33793 1.20393 0.95236 0.83422 0.98308 1.20952 1.36182 0.97286 1.00601 0.90050 1.24838 0.95662 0.97240 0.95266 1.69882 1.46832 1.13227 1.23869 0.86950 0.80795 0.79430 0.83410 1.20077 1.21080 1.18518 1.23296 1.02075 0.95072 0.88584 0.86621 1.23197 1.03738 0.95028 0.95653 1.23110 0.95310 0.82044 0.93249 1.22235 0.97221 1.01980 1.00621 1.21843 0.97144 0.97413 1.03363 1.87018 1.56466 1.17274 1.65777 1.24532 0.76491 0.84386 0.85769 1.90716 1.56801 1.19426 1.66296 0.89175 0.92706 0.96466 0.95604 0.97314 0.92605 0.88126 0.88400 0.91264 0.90087 0.91850 0.91204 0.90102 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.64 60.06 0.52 0.98 16 2 N -0.50 -10.34 4.73 -236.40 -1.12 -11.46 16 3 C 0.15 3.84 3.42 -4.98 -0.02 3.83 16 4 C -0.51 -14.78 9.07 -34.44 -0.31 -15.09 16 5 H 0.08 2.50 7.35 -52.49 -0.39 2.12 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 8 Si 0.87 22.37 27.47 -169.99 -4.67 17.70 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.80 6.53 56.52 0.37 -6.43 16 12 C 0.02 0.36 3.04 -67.77 -0.21 0.15 16 13 H 0.12 1.86 7.96 -51.93 -0.41 1.45 16 14 C -0.14 -1.65 5.64 -25.02 -0.14 -1.79 16 15 C 0.10 1.12 1.24 -89.69 -0.11 1.00 16 16 C -0.16 -1.45 8.77 37.15 0.33 -1.13 16 17 C -0.14 -1.19 8.92 37.16 0.33 -0.85 16 18 O -0.35 -5.60 10.48 -38.48 -0.40 -6.00 16 19 C 0.45 8.52 6.01 36.31 0.22 8.74 16 20 O -0.45 -10.41 16.52 -18.41 -0.30 -10.72 16 21 H 0.09 1.91 6.86 -51.93 -0.36 1.55 16 22 H 0.05 0.86 6.23 -51.93 -0.32 0.54 16 23 H 0.02 0.35 7.08 -51.93 -0.37 -0.01 16 24 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 25 H 0.01 0.25 5.83 -51.93 -0.30 -0.06 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.10 1.20 6.02 -51.93 -0.31 0.89 16 28 H 0.10 0.92 7.92 -51.93 -0.41 0.51 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 273.85 15.07 4.13 4.13 Total: -1.00 -33.86 273.85 -6.04 -39.91 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.96 Total: -4.32 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 0.51 Total: -2.13 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.35 Total: -38.55 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.71 Total: -16.72 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.86 -6.04 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795667273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.267 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds