Wall clock time and date at job start Thu Apr 9 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99772 * 2 1 4 4 C 1.50701 * 109.47260 * 293.95469 * 3 2 1 5 5 H 1.07994 * 120.00187 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99970 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00308 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99972 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47123 * 90.00097 * 8 6 4 10 10 H 1.48504 * 109.47160 * 210.00342 * 8 6 4 11 11 H 1.48502 * 109.47284 * 329.99978 * 8 6 4 12 12 C 1.46895 * 110.99835 * 123.95375 * 2 1 3 13 13 H 1.08997 * 110.41713 * 296.88752 * 12 2 1 14 14 C 1.54491 * 110.36994 * 59.19415 * 12 2 1 15 15 C 1.54568 * 102.14970 * 134.17709 * 14 12 2 16 16 C 1.53001 * 110.44507 * 214.41094 * 15 14 12 17 17 C 1.53002 * 110.43848 * 91.88908 * 15 14 12 18 18 O 1.45837 * 104.44219 * 333.15272 * 15 14 12 19 19 C 1.34064 * 109.90695 * 30.60052 * 18 15 14 20 20 O 1.20823 * 125.09136 * 159.20613 * 19 18 15 21 21 H 1.08999 * 109.47113 * 296.04625 * 1 2 3 22 22 H 1.09003 * 109.47085 * 56.04853 * 1 2 3 23 23 H 1.08995 * 109.47173 * 176.04658 * 1 2 3 24 24 H 1.09000 * 109.47268 * 53.95691 * 3 2 1 25 25 H 1.09003 * 109.47160 * 173.95758 * 3 2 1 26 26 H 0.96998 * 120.00317 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.86596 * 252.34212 * 14 12 2 28 28 H 1.09000 * 110.86791 * 15.80593 * 14 12 2 29 29 H 1.08994 * 109.47634 * 176.47816 * 16 15 14 30 30 H 1.08998 * 109.46540 * 296.47808 * 16 15 14 31 31 H 1.09004 * 109.46759 * 56.47182 * 16 15 14 32 32 H 1.09002 * 109.47459 * 303.52445 * 17 15 14 33 33 H 1.08994 * 109.47177 * 63.53020 * 17 15 14 34 34 H 1.09003 * 109.47086 * 183.52394 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0276 3.3492 -1.5289 7 7 2.7136 4.0013 -0.6158 8 14 1.5825 4.1870 -3.1380 9 1 0.2706 4.8680 -2.9952 10 1 2.6251 5.1876 -3.4801 11 1 1.4980 3.1714 -4.2181 12 6 1.9954 -0.7660 1.1376 13 1 1.7004 -0.3010 2.0782 14 6 1.4956 -2.2266 1.0797 15 6 2.7884 -3.0243 1.3654 16 6 2.7919 -4.3362 0.5780 17 6 2.9266 -3.2988 2.8642 18 8 3.8631 -2.1519 0.9062 19 6 3.5027 -0.8688 1.0509 20 8 4.2669 0.0656 1.1035 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3444 0.1082 26 1 2.9888 4.9172 -0.7780 27 1 0.7470 -2.4117 1.8501 28 1 1.1002 -2.4629 0.0918 29 1 3.7359 -4.8559 0.7418 30 1 1.9678 -4.9647 0.9157 31 1 2.6742 -4.1226 -0.4844 32 1 2.9039 -2.3556 3.4100 33 1 2.1023 -3.9303 3.1955 34 1 3.8723 -3.8063 3.0549 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795667274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:14 Heat of formation + Delta-G solvation = -76.974714 kcal Electronic energy + Delta-G solvation = -16525.647153 eV Core-core repulsion = 13844.906977 eV Total energy + Delta-G solvation = -2680.740175 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93095 -37.38731 -36.34611 -33.47417 -32.52739 -29.93255 -27.61839 -27.12806 -25.56312 -23.34382 -21.61356 -20.88440 -19.41533 -16.61736 -16.53230 -16.19766 -15.53058 -14.99377 -14.33516 -14.07971 -13.70506 -13.57872 -13.21244 -12.74740 -12.49448 -12.34145 -12.02736 -11.93871 -11.80760 -11.45990 -11.21195 -10.96217 -10.86966 -10.67449 -10.51239 -10.18508 -9.99846 -9.47576 -9.02810 -8.36672 -7.43811 -5.95579 -3.97709 2.55821 3.34825 3.39159 3.41302 3.45624 4.32476 4.41324 4.44352 4.58062 4.72527 5.03278 5.11966 5.37967 5.38166 5.40708 5.56834 5.61516 5.68347 5.76221 5.87932 5.98801 6.01216 6.11226 6.21568 6.64038 7.13633 7.26157 7.34256 7.77807 7.97155 8.12767 8.19759 8.50657 9.08509 9.64825 11.15282 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.007114 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.889037 B = 3935.176560 C = 4162.842069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.521 5.521 3 C 0.172 3.828 4 C -0.510 4.510 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.021 3.979 13 H 0.072 0.928 14 C -0.140 4.140 15 C 0.104 3.896 16 C -0.140 4.140 17 C -0.164 4.164 18 O -0.342 6.342 19 C 0.492 3.508 20 O -0.435 6.435 21 H 0.015 0.985 22 H 0.081 0.919 23 H 0.049 0.951 24 H -0.008 1.008 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -15.953 5.687 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.248 5.248 3 C 0.048 3.952 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.090 4.090 13 H 0.089 0.911 14 C -0.178 4.178 15 C 0.066 3.934 16 C -0.197 4.197 17 C -0.221 4.221 18 O -0.260 6.260 19 C 0.330 3.670 20 O -0.315 6.315 21 H 0.033 0.967 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.010 0.990 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.121 -15.626 5.247 16.777 hybrid contribution -0.595 1.102 -0.014 1.253 sum -3.717 -14.524 5.233 15.879 Atomic orbital electron populations 1.22295 0.87801 0.99886 1.01186 1.62355 1.07518 1.18901 1.35988 1.20160 0.97917 0.80325 0.96806 1.21084 1.35149 0.96996 1.01612 0.91912 1.24993 0.95274 0.97376 0.96968 1.69986 1.37856 1.11363 1.34031 0.86497 0.77913 0.79245 0.83739 1.20777 1.21211 1.19798 1.22863 0.93213 0.95907 0.96983 0.91091 1.23183 0.96701 0.93269 1.04630 1.22964 0.84891 0.90848 0.94654 1.21832 1.02932 0.94057 1.00894 1.22244 1.03387 1.02902 0.93589 1.87045 1.43872 1.18287 1.76749 1.22853 0.90644 0.81607 0.71848 1.90734 1.60400 1.37603 1.42753 0.96684 0.90000 0.93229 0.99048 0.92199 0.92919 0.89302 0.88083 0.91430 0.90392 0.90990 0.91911 0.90315 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.10 60.07 0.55 1.22 16 2 N -0.52 -11.44 4.57 -236.41 -1.08 -12.52 16 3 C 0.17 4.75 4.55 -4.98 -0.02 4.73 16 4 C -0.51 -14.87 8.46 -34.44 -0.29 -15.17 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 7 N -0.89 -27.86 13.29 55.43 0.74 -27.13 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.02 0.39 2.71 -67.78 -0.18 0.20 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.14 -1.80 4.89 -25.13 -0.12 -1.92 16 15 C 0.10 1.27 1.24 -89.79 -0.11 1.16 16 16 C -0.14 -1.32 8.92 37.16 0.33 -0.99 16 17 C -0.16 -1.59 8.78 37.16 0.33 -1.27 16 18 O -0.34 -6.04 10.48 -38.48 -0.40 -6.45 16 19 C 0.49 10.26 7.68 36.31 0.28 10.54 16 20 O -0.43 -10.99 15.61 -18.41 -0.29 -11.28 16 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 23 H 0.05 0.73 6.68 -51.93 -0.35 0.38 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 25 H 0.06 1.84 5.31 -51.93 -0.28 1.56 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 28 H 0.10 1.30 7.03 -51.93 -0.37 0.94 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 32 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -34.31 278.88 -6.26 -40.57 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.06 Total: -4.70 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 0.65 Total: 0.06 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.34 Total: -39.65 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.69 Total: -17.72 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.31 -6.26 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795667274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.405 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds