Wall clock time and date at job start Thu Apr 9 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99772 * 2 1 4 4 C 1.50701 * 109.47260 * 293.95469 * 3 2 1 5 5 H 1.07994 * 120.00187 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99970 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00308 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99972 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47123 * 90.00097 * 8 6 4 10 10 H 1.48504 * 109.47160 * 210.00342 * 8 6 4 11 11 H 1.48502 * 109.47284 * 329.99978 * 8 6 4 12 12 C 1.46895 * 110.99835 * 123.95375 * 2 1 3 13 13 H 1.08997 * 110.41713 * 296.88752 * 12 2 1 14 14 C 1.54491 * 110.36994 * 59.19415 * 12 2 1 15 15 C 1.54568 * 102.14970 * 134.17709 * 14 12 2 16 16 C 1.53001 * 110.44507 * 214.41094 * 15 14 12 17 17 C 1.53002 * 110.43848 * 91.88908 * 15 14 12 18 18 O 1.45837 * 104.44219 * 333.15272 * 15 14 12 19 19 C 1.34064 * 109.90695 * 30.60052 * 18 15 14 20 20 O 1.20823 * 125.09136 * 159.20613 * 19 18 15 21 21 H 1.08999 * 109.47113 * 296.04625 * 1 2 3 22 22 H 1.09003 * 109.47085 * 56.04853 * 1 2 3 23 23 H 1.08995 * 109.47173 * 176.04658 * 1 2 3 24 24 H 1.09000 * 109.47268 * 53.95691 * 3 2 1 25 25 H 1.09003 * 109.47160 * 173.95758 * 3 2 1 26 26 H 0.96998 * 120.00317 * 179.97438 * 7 6 4 27 27 H 1.09003 * 110.86596 * 252.34212 * 14 12 2 28 28 H 1.09000 * 110.86791 * 15.80593 * 14 12 2 29 29 H 1.08994 * 109.47634 * 176.47816 * 16 15 14 30 30 H 1.08998 * 109.46540 * 296.47808 * 16 15 14 31 31 H 1.09004 * 109.46759 * 56.47182 * 16 15 14 32 32 H 1.09002 * 109.47459 * 303.52445 * 17 15 14 33 33 H 1.08994 * 109.47177 * 63.53020 * 17 15 14 34 34 H 1.09003 * 109.47086 * 183.52394 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0276 3.3492 -1.5289 7 7 2.7136 4.0013 -0.6158 8 14 1.5825 4.1870 -3.1380 9 1 0.2706 4.8680 -2.9952 10 1 2.6251 5.1876 -3.4801 11 1 1.4980 3.1714 -4.2181 12 6 1.9954 -0.7660 1.1376 13 1 1.7004 -0.3010 2.0782 14 6 1.4956 -2.2266 1.0797 15 6 2.7884 -3.0243 1.3654 16 6 2.7919 -4.3362 0.5780 17 6 2.9266 -3.2988 2.8642 18 8 3.8631 -2.1519 0.9062 19 6 3.5027 -0.8688 1.0509 20 8 4.2669 0.0656 1.1035 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8309 25 1 3.0797 1.3444 0.1082 26 1 2.9888 4.9172 -0.7780 27 1 0.7470 -2.4117 1.8501 28 1 1.1002 -2.4629 0.0918 29 1 3.7359 -4.8559 0.7418 30 1 1.9678 -4.9647 0.9157 31 1 2.6742 -4.1226 -0.4844 32 1 2.9039 -2.3556 3.4100 33 1 2.1023 -3.9303 3.1955 34 1 3.8723 -3.8063 3.0549 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795667274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:14 Heat of formation + Delta-G solvation = -101.896995 kcal Electronic energy + Delta-G solvation = -16526.727864 eV Core-core repulsion = 13844.906977 eV Total energy + Delta-G solvation = -2681.820886 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.32027 -38.96323 -38.06089 -34.92550 -34.38877 -31.40623 -29.08730 -28.31802 -27.17013 -24.90309 -23.42232 -22.23844 -20.82013 -18.59190 -18.02609 -17.88508 -16.93845 -16.76698 -15.94240 -15.58889 -15.11869 -14.79515 -14.63069 -14.35884 -13.87022 -13.62365 -13.32382 -13.17639 -13.02788 -12.81926 -12.70660 -12.66070 -12.40672 -12.24911 -12.04718 -11.91075 -11.46296 -11.26034 -10.98217 -10.59438 -9.23369 -8.21420 -6.33123 0.96590 1.37967 1.41665 1.52898 2.11725 2.38474 2.95521 3.11026 3.20806 3.33842 3.76924 3.85650 4.05032 4.14301 4.50014 4.68284 4.69937 4.74755 4.79893 4.85129 4.91687 4.95906 5.09563 5.12784 5.23665 5.33786 5.35087 5.58946 5.82724 6.00044 6.18476 6.44634 6.46085 6.83389 7.35706 8.90584 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.044092 B = 0.007114 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.889037 B = 3935.176560 C = 4162.842069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.187 3.813 4 C -0.526 4.526 5 H 0.069 0.931 6 C -0.005 4.005 7 N -0.937 5.937 8 Si 0.977 3.023 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.017 3.983 13 H 0.073 0.927 14 C -0.124 4.124 15 C 0.092 3.908 16 C -0.137 4.137 17 C -0.162 4.162 18 O -0.356 6.356 19 C 0.487 3.513 20 O -0.499 6.499 21 H 0.017 0.983 22 H 0.062 0.938 23 H 0.099 0.901 24 H -0.041 1.041 25 H 0.021 0.979 26 H 0.264 0.736 27 H 0.132 0.868 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.119 0.881 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 -18.477 5.208 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.257 5.257 3 C 0.061 3.939 4 C -0.564 4.564 5 H 0.087 0.913 6 C -0.203 4.203 7 N -0.577 5.577 8 Si 0.800 3.200 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.186 1.186 12 C -0.093 4.093 13 H 0.091 0.909 14 C -0.161 4.161 15 C 0.057 3.943 16 C -0.193 4.193 17 C -0.219 4.219 18 O -0.274 6.274 19 C 0.329 3.671 20 O -0.384 6.384 21 H 0.036 0.964 22 H 0.081 0.919 23 H 0.118 0.882 24 H -0.024 1.024 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.137 0.863 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.349 -18.221 4.773 19.580 hybrid contribution 0.092 1.751 0.201 1.765 sum -5.257 -16.469 4.974 17.989 Atomic orbital electron populations 1.22362 0.85343 1.02734 1.00495 1.62199 1.09695 1.15595 1.38241 1.19721 0.95594 0.83364 0.95193 1.21467 1.35084 0.97593 1.02271 0.91273 1.26063 0.94917 0.98232 1.01099 1.70152 1.39171 1.11831 1.36584 0.85279 0.78039 0.78018 0.78634 1.19157 1.21021 1.18631 1.23032 0.91583 0.99031 0.95683 0.90924 1.23280 0.97783 0.88424 1.06662 1.23601 0.82933 0.90910 0.96891 1.21913 1.04875 0.92667 0.99886 1.22306 1.05370 1.02971 0.91267 1.87026 1.46656 1.17411 1.76258 1.23395 0.91553 0.81994 0.70202 1.90686 1.62034 1.39936 1.45734 0.96405 0.91893 0.88248 1.02357 0.96074 0.92766 0.84970 0.87393 0.90997 0.86445 0.92023 0.93427 0.86273 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 9.10 127.69 1.16 2.50 16 2 N -0.53 -23.42 4.57 -901.86 -4.12 -27.54 16 3 C 0.19 10.83 4.55 85.56 0.39 11.22 16 4 C -0.53 -31.46 8.46 25.60 0.22 -31.24 16 5 H 0.07 3.94 7.12 -2.91 -0.02 3.92 16 6 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 7 N -0.94 -60.65 13.29 21.45 0.28 -60.36 16 8 Si 0.98 46.20 29.54 68.60 2.03 48.22 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.02 0.62 2.71 44.88 0.12 0.74 16 13 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 14 C -0.12 -2.73 4.89 31.63 0.15 -2.58 16 15 C 0.09 2.00 1.24 -10.26 -0.01 1.99 16 16 C -0.14 -2.03 8.92 71.98 0.64 -1.39 16 17 C -0.16 -2.61 8.78 71.98 0.63 -1.97 16 18 O -0.36 -12.58 10.48 -50.16 -0.53 -13.11 16 19 C 0.49 21.10 7.68 71.44 0.55 21.65 16 20 O -0.50 -27.15 15.61 21.65 0.34 -26.82 16 21 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.06 2.46 6.76 -2.39 -0.02 2.45 16 23 H 0.10 2.51 6.68 -2.39 -0.02 2.50 16 24 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 25 H 0.02 1.40 5.31 -2.39 -0.01 1.38 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.13 1.83 7.92 -2.39 -0.02 1.81 16 28 H 0.11 2.29 7.03 -2.39 -0.02 2.27 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 32 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -80.80 278.88 3.39 -77.41 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.07 Total: 1.14 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.32 Total: 1.04 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.83 Total: -87.90 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.19 Total: -39.92 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -80.80 3.39 -77.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795667274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.486 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds