Wall clock time and date at job start Thu Apr 9 2020 11:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47131 * 2 1 4 4 C 1.50694 * 109.47517 * 119.99958 * 2 1 3 5 5 O 1.21216 * 120.00036 * 265.00591 * 4 2 1 6 6 O 1.34312 * 120.00304 * 84.99986 * 4 2 1 7 7 C 1.34916 * 117.00295 * 180.02562 * 6 4 2 8 8 H 1.08003 * 119.99786 * 359.97438 * 7 6 4 9 9 C 1.38751 * 120.00326 * 179.97438 * 7 6 4 10 10 N 1.31445 * 119.99692 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00466 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47025 * 60.00234 * 11 9 7 13 13 H 1.48498 * 109.47567 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47533 * 300.00729 * 11 9 7 15 15 N 1.46896 * 109.47108 * 240.00099 * 2 1 3 16 16 C 1.48534 * 111.00199 * 66.92032 * 15 2 1 17 17 C 1.54943 * 103.22908 * 159.72159 * 16 15 2 18 18 C 1.54601 * 102.91887 * 322.58403 * 17 16 15 19 19 C 1.47902 * 110.99939 * 184.31297 * 15 2 1 20 20 H 1.08997 * 109.47567 * 300.00004 * 1 2 3 21 21 H 1.08995 * 109.47373 * 59.99892 * 1 2 3 22 22 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47300 * 186.86201 * 3 2 1 24 24 H 1.09001 * 109.46610 * 306.86244 * 3 2 1 25 25 H 1.09002 * 109.47067 * 66.85661 * 3 2 1 26 26 H 0.96998 * 119.99793 * 180.02562 * 10 9 7 27 27 H 1.09003 * 110.66579 * 278.15716 * 16 15 2 28 28 H 1.08999 * 110.66636 * 41.28240 * 16 15 2 29 29 H 1.09001 * 110.72215 * 204.23002 * 17 16 15 30 30 H 1.08996 * 110.72269 * 80.94448 * 17 16 15 31 31 H 1.09001 * 110.30673 * 263.04238 * 18 17 16 32 32 H 1.08998 * 110.39012 * 140.91833 * 18 17 16 33 33 H 1.08996 * 109.91931 * 333.50893 * 19 15 2 34 34 H 1.09005 * 109.91569 * 94.60861 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3206 -0.0752 2.2217 6 8 2.1607 -2.0473 1.2287 7 6 2.6152 -2.6205 2.3623 8 1 2.8578 -2.0074 3.2177 9 6 2.7710 -3.9976 2.4292 10 7 2.4763 -4.7437 1.3880 11 14 3.4010 -4.7912 3.9985 12 1 2.4746 -4.4803 5.1168 13 1 3.4774 -6.2626 3.8131 14 1 4.7521 -4.2616 4.3133 15 7 2.0196 -0.6925 -1.1994 16 6 1.6846 0.0708 -2.4288 17 6 2.6857 -0.4829 -3.4738 18 6 3.9723 -0.6926 -2.6426 19 6 3.4944 -0.8028 -1.1828 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1230 1.4450 -0.1228 24 1 1.5798 1.9905 -0.8222 25 1 1.7803 1.9197 0.9450 26 1 2.5849 -5.7065 1.4349 27 1 0.6579 -0.1275 -2.7369 28 1 1.8414 1.1382 -2.2736 29 1 2.8543 0.2434 -4.2689 30 1 2.3322 -1.4293 -3.8829 31 1 4.6408 0.1605 -2.7585 32 1 4.4752 -1.6107 -2.9464 33 1 3.9207 0.0069 -0.5905 34 1 3.7901 -1.7647 -0.7639 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805610766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:18 Heat of formation + Delta-G solvation = -70.695075 kcal Electronic energy + Delta-G solvation = -16843.936849 eV Core-core repulsion = 14163.468979 eV Total energy + Delta-G solvation = -2680.467870 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.90365 -38.05352 -35.28824 -33.73755 -32.03781 -29.00935 -28.49432 -27.01025 -25.53406 -23.21586 -21.09285 -20.36130 -18.53028 -17.61167 -16.86559 -15.63042 -15.13607 -14.68539 -14.39844 -14.13388 -13.77947 -13.15836 -12.92709 -12.73643 -12.19766 -11.81105 -11.69323 -11.47164 -11.19371 -11.13759 -11.09371 -10.98615 -10.78370 -10.70433 -10.41816 -10.27336 -10.15838 -9.68931 -8.84635 -8.48613 -7.88828 -6.31907 -3.99590 3.16411 3.22385 3.26285 3.56090 3.98875 4.32441 4.55743 4.92212 5.03332 5.16204 5.21744 5.29744 5.43411 5.59286 5.73424 5.84832 5.90562 5.99973 6.03686 6.04476 6.08241 6.11729 6.24951 6.39994 6.46643 6.63852 6.71419 6.82533 7.35118 7.41674 7.47725 8.03628 8.79582 9.15783 9.99517 10.84968 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.008929 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.380167 B = 3135.131149 C = 3557.502914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.118 3.882 3 C -0.170 4.170 4 C 0.407 3.593 5 O -0.562 6.562 6 O -0.190 6.190 7 C -0.386 4.386 8 H 0.091 0.909 9 C 0.045 3.955 10 N -0.857 5.857 11 Si 0.939 3.061 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.271 1.271 15 N -0.487 5.487 16 C 0.025 3.975 17 C -0.121 4.121 18 C -0.128 4.128 19 C 0.030 3.970 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.268 0.732 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 7.721 -8.304 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.026 3.974 3 C -0.228 4.228 4 C 0.252 3.748 5 O -0.459 6.459 6 O -0.095 6.095 7 C -0.463 4.463 8 H 0.109 0.891 9 C -0.160 4.160 10 N -0.494 5.494 11 Si 0.764 3.236 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.196 1.196 15 N -0.212 5.212 16 C -0.103 4.103 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.098 4.098 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.735 7.088 -8.091 10.782 hybrid contribution 0.710 0.396 0.874 1.193 sum -0.025 7.485 -7.218 10.398 Atomic orbital electron populations 1.21745 0.91912 1.03618 1.01621 1.20818 0.96821 0.91329 0.88392 1.22325 1.01597 0.95979 1.02930 1.22805 0.80006 0.83391 0.88551 1.90544 1.51776 1.67844 1.35787 1.83987 1.68771 1.18224 1.38520 1.21184 1.43818 0.90402 0.90894 0.89129 1.25285 0.96769 0.95166 0.98761 1.70018 1.44620 1.05681 1.29034 0.85821 0.79453 0.77838 0.80497 1.19573 1.20407 1.19613 1.65036 1.11200 1.44753 1.00175 1.23387 0.99879 0.96324 0.90681 1.22445 0.95136 1.01265 0.97021 1.22370 0.97463 1.01674 0.95073 1.22979 0.87693 1.03034 0.96082 0.91961 0.92046 0.90694 0.92142 0.91773 0.90688 0.92181 0.90200 0.93299 0.91605 0.90720 0.92121 0.91053 0.93814 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.46 37.16 0.31 -1.95 16 2 C 0.12 2.32 0.65 -132.76 -0.09 2.23 16 3 C -0.17 -2.85 7.29 37.16 0.27 -2.58 16 4 C 0.41 10.44 5.69 36.00 0.20 10.64 16 5 O -0.56 -15.62 15.18 -19.06 -0.29 -15.91 16 6 O -0.19 -5.55 8.82 -20.69 -0.18 -5.74 16 7 C -0.39 -11.67 9.65 30.92 0.30 -11.38 16 8 H 0.09 2.77 6.86 -52.48 -0.36 2.41 16 9 C 0.04 1.28 5.49 -17.53 -0.10 1.19 16 10 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 11 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 N -0.49 -9.14 4.88 -216.18 -1.05 -10.20 16 16 C 0.02 0.35 5.47 -1.89 -0.01 0.34 16 17 C -0.12 -1.54 7.06 -24.86 -0.18 -1.72 16 18 C -0.13 -1.82 6.93 -25.37 -0.18 -2.00 16 19 C 0.03 0.55 5.34 -2.75 -0.01 0.54 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 21 H 0.06 0.85 7.14 -51.93 -0.37 0.48 16 22 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.06 1.03 6.03 -51.93 -0.31 0.72 16 24 H 0.06 0.87 6.35 -51.93 -0.33 0.54 16 25 H 0.07 1.31 7.61 -51.93 -0.40 0.92 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 28 H 0.05 0.64 5.55 -51.93 -0.29 0.35 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.83 5.62 -51.93 -0.29 0.54 16 34 H 0.09 2.11 7.75 -51.93 -0.40 1.71 16 LS Contribution 273.24 15.07 4.12 4.12 Total: -1.00 -33.05 273.24 -5.97 -39.02 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.82 Total: 1.39 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 0.53 Total: -4.67 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.30 Total: -34.89 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.47 Total: -21.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.05 -5.97 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805610766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.678 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds