Wall clock time and date at job start Thu Apr 9 2020 11:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47131 * 2 1 4 4 C 1.50694 * 109.47517 * 119.99958 * 2 1 3 5 5 O 1.21216 * 120.00036 * 265.00591 * 4 2 1 6 6 O 1.34312 * 120.00304 * 84.99986 * 4 2 1 7 7 C 1.34916 * 117.00295 * 180.02562 * 6 4 2 8 8 H 1.08003 * 119.99786 * 359.97438 * 7 6 4 9 9 C 1.38751 * 120.00326 * 179.97438 * 7 6 4 10 10 N 1.31445 * 119.99692 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00466 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47025 * 60.00234 * 11 9 7 13 13 H 1.48498 * 109.47567 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47533 * 300.00729 * 11 9 7 15 15 N 1.46896 * 109.47108 * 240.00099 * 2 1 3 16 16 C 1.48534 * 111.00199 * 66.92032 * 15 2 1 17 17 C 1.54943 * 103.22908 * 159.72159 * 16 15 2 18 18 C 1.54601 * 102.91887 * 322.58403 * 17 16 15 19 19 C 1.47902 * 110.99939 * 184.31297 * 15 2 1 20 20 H 1.08997 * 109.47567 * 300.00004 * 1 2 3 21 21 H 1.08995 * 109.47373 * 59.99892 * 1 2 3 22 22 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47300 * 186.86201 * 3 2 1 24 24 H 1.09001 * 109.46610 * 306.86244 * 3 2 1 25 25 H 1.09002 * 109.47067 * 66.85661 * 3 2 1 26 26 H 0.96998 * 119.99793 * 180.02562 * 10 9 7 27 27 H 1.09003 * 110.66579 * 278.15716 * 16 15 2 28 28 H 1.08999 * 110.66636 * 41.28240 * 16 15 2 29 29 H 1.09001 * 110.72215 * 204.23002 * 17 16 15 30 30 H 1.08996 * 110.72269 * 80.94448 * 17 16 15 31 31 H 1.09001 * 110.30673 * 263.04238 * 18 17 16 32 32 H 1.08998 * 110.39012 * 140.91833 * 18 17 16 33 33 H 1.08996 * 109.91931 * 333.50893 * 19 15 2 34 34 H 1.09005 * 109.91569 * 94.60861 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3206 -0.0752 2.2217 6 8 2.1607 -2.0473 1.2287 7 6 2.6152 -2.6205 2.3623 8 1 2.8578 -2.0074 3.2177 9 6 2.7710 -3.9976 2.4292 10 7 2.4763 -4.7437 1.3880 11 14 3.4010 -4.7912 3.9985 12 1 2.4746 -4.4803 5.1168 13 1 3.4774 -6.2626 3.8131 14 1 4.7521 -4.2616 4.3133 15 7 2.0196 -0.6925 -1.1994 16 6 1.6846 0.0708 -2.4288 17 6 2.6857 -0.4829 -3.4738 18 6 3.9723 -0.6926 -2.6426 19 6 3.4944 -0.8028 -1.1828 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1230 1.4450 -0.1228 24 1 1.5798 1.9905 -0.8222 25 1 1.7803 1.9197 0.9450 26 1 2.5849 -5.7065 1.4349 27 1 0.6579 -0.1275 -2.7369 28 1 1.8414 1.1382 -2.2736 29 1 2.8543 0.2434 -4.2689 30 1 2.3322 -1.4293 -3.8829 31 1 4.6408 0.1605 -2.7585 32 1 4.4752 -1.6107 -2.9464 33 1 3.9207 0.0069 -0.5905 34 1 3.7901 -1.7647 -0.7639 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805610766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:17 Heat of formation + Delta-G solvation = -94.011819 kcal Electronic energy + Delta-G solvation = -16844.947939 eV Core-core repulsion = 14163.468979 eV Total energy + Delta-G solvation = -2681.478960 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.63784 -39.78173 -37.33953 -35.24317 -34.26558 -30.29690 -29.78646 -28.43196 -27.64014 -24.92029 -22.63391 -21.56679 -20.29770 -19.81042 -18.59134 -17.18063 -16.73592 -16.51747 -16.31946 -15.96976 -15.08511 -14.79104 -14.41920 -14.22838 -13.70573 -13.51109 -13.11202 -13.03740 -12.97403 -12.65260 -12.49088 -12.40700 -12.23498 -12.18722 -12.06913 -11.93367 -11.90926 -11.30237 -10.88732 -10.68076 -9.27681 -8.51525 -6.31865 1.28443 1.30980 1.46983 1.61760 2.10346 2.71460 2.91583 3.00881 3.69217 3.76079 3.90634 4.01048 4.06752 4.35522 4.53044 4.56983 4.60212 4.63092 4.74578 4.75868 4.90673 4.94893 5.04351 5.08761 5.11112 5.16864 5.20001 5.30242 5.37361 5.83242 5.95006 6.07669 6.66899 6.91870 7.83167 8.67856 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.008929 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.380167 B = 3135.131149 C = 3557.502914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.119 3.881 3 C -0.161 4.161 4 C 0.401 3.599 5 O -0.591 6.591 6 O -0.217 6.217 7 C -0.428 4.428 8 H 0.075 0.925 9 C 0.000 4.000 10 N -0.894 5.894 11 Si 1.013 2.987 12 H -0.262 1.262 13 H -0.258 1.258 14 H -0.263 1.263 15 N -0.513 5.513 16 C 0.024 3.976 17 C -0.113 4.113 18 C -0.121 4.121 19 C 0.031 3.969 20 H 0.063 0.937 21 H 0.106 0.894 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.278 0.722 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 8.794 -9.729 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.028 3.972 3 C -0.219 4.219 4 C 0.249 3.751 5 O -0.490 6.490 6 O -0.124 6.124 7 C -0.504 4.504 8 H 0.092 0.908 9 C -0.201 4.201 10 N -0.530 5.530 11 Si 0.832 3.168 12 H -0.187 1.187 13 H -0.181 1.181 14 H -0.188 1.188 15 N -0.238 5.238 16 C -0.103 4.103 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.097 4.097 20 H 0.082 0.918 21 H 0.125 0.875 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.043 8.178 -9.545 12.612 hybrid contribution 0.783 0.121 1.278 1.504 sum -0.260 8.300 -8.267 11.717 Atomic orbital electron populations 1.21762 0.89879 1.02817 1.03959 1.20976 0.98217 0.91943 0.86111 1.22300 1.01458 0.94002 1.04174 1.24271 0.78060 0.82426 0.90375 1.90496 1.52740 1.68046 1.37717 1.84020 1.69690 1.20245 1.38419 1.21379 1.46345 0.91443 0.91234 0.90753 1.26480 0.95987 0.94884 1.02771 1.70111 1.45114 1.06443 1.31366 0.84765 0.78990 0.77543 0.75524 1.18662 1.18132 1.18783 1.64944 1.10907 1.46580 1.01417 1.23579 1.01167 0.97022 0.88492 1.22469 0.93303 1.02084 0.97177 1.22354 0.98835 1.02731 0.91988 1.22842 0.88396 0.99606 0.98906 0.91771 0.87498 0.93087 0.92850 0.87279 0.91786 0.91308 0.88621 0.91091 0.87813 0.91293 0.89604 0.91320 0.94726 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.46 71.98 0.61 -3.59 16 2 C 0.12 4.64 0.65 2.78 0.00 4.64 16 3 C -0.16 -5.10 7.29 71.98 0.52 -4.57 16 4 C 0.40 21.48 5.69 71.23 0.41 21.89 16 5 O -0.59 -34.34 15.18 20.76 0.32 -34.02 16 6 O -0.22 -13.47 8.82 14.90 0.13 -13.34 16 7 C -0.43 -27.20 9.65 67.94 0.66 -26.55 16 8 H 0.07 4.82 6.86 -2.91 -0.02 4.80 16 9 C 0.00 -0.01 5.49 84.87 0.47 0.46 16 10 N -0.89 -54.62 13.67 21.62 0.30 -54.33 16 11 Si 1.01 45.07 29.55 68.60 2.03 47.09 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 N -0.51 -18.97 4.88 -837.86 -4.09 -23.06 16 16 C 0.02 0.59 5.47 86.65 0.47 1.06 16 17 C -0.11 -2.48 7.06 31.80 0.22 -2.26 16 18 C -0.12 -3.26 6.93 31.48 0.22 -3.04 16 19 C 0.03 1.17 5.34 86.45 0.46 1.63 16 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.11 2.54 7.14 -2.39 -0.02 2.53 16 22 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.05 1.75 6.03 -2.39 -0.01 1.74 16 24 H 0.11 2.46 6.35 -2.39 -0.02 2.44 16 25 H 0.06 2.17 7.61 -2.39 -0.02 2.15 16 26 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.10 2.10 7.72 -2.39 -0.02 2.08 16 28 H 0.07 1.47 5.55 -2.39 -0.01 1.46 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.03 1.35 5.62 -2.39 -0.01 1.34 16 34 H 0.04 1.86 7.75 -2.38 -0.02 1.84 16 Total: -1.00 -76.88 273.24 3.81 -73.07 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.09 Total: 14.91 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.04 Total: -10.33 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.79 Total: -77.39 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: 0.45 Total: -47.36 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.88 3.81 -73.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805610766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.938 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds