Wall clock time and date at job start Thu Apr 9 2020 11:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99518 * 2 1 4 4 H 1.07997 * 119.99456 * 180.49384 * 3 2 1 5 5 C 1.38943 * 120.00267 * 0.49930 * 3 2 1 6 6 N 1.31414 * 120.00339 * 6.87101 * 5 3 2 7 7 Si 1.86798 * 120.00175 * 186.88060 * 5 3 2 8 8 H 1.48499 * 109.47124 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47615 * 119.99681 * 7 5 3 10 10 H 1.48506 * 109.47059 * 239.99693 * 7 5 3 11 11 C 1.34772 * 120.00424 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99741 * 4.55488 * 11 2 1 13 13 C 1.50698 * 120.00040 * 184.56180 * 11 2 1 14 14 C 1.52997 * 109.46999 * 280.10784 * 13 11 2 15 15 O 1.42890 * 109.47514 * 40.11225 * 13 11 2 16 16 C 1.53002 * 109.47219 * 160.11377 * 13 11 2 17 17 C 1.53778 * 113.61580 * 277.49707 * 16 13 11 18 18 C 1.53779 * 87.08368 * 220.01775 * 17 16 13 19 19 C 1.53777 * 113.61705 * 179.97438 * 16 13 11 20 20 H 1.09000 * 109.46682 * 174.50222 * 1 2 3 21 21 H 1.08994 * 109.47553 * 294.50822 * 1 2 3 22 22 H 1.09006 * 109.47151 * 54.51127 * 1 2 3 23 23 H 0.96996 * 120.00359 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.47438 * 300.00537 * 14 13 11 25 25 H 1.09004 * 109.47244 * 60.00241 * 14 13 11 26 26 H 1.09003 * 109.47173 * 179.97438 * 14 13 11 27 27 H 0.96702 * 114.00351 * 60.00028 * 15 13 11 28 28 H 1.09001 * 112.90627 * 48.74710 * 16 13 11 29 29 H 1.09005 * 113.61365 * 334.56831 * 17 16 13 30 30 H 1.09000 * 113.61662 * 105.46599 * 17 16 13 31 31 H 1.08997 * 113.60949 * 270.87995 * 18 17 16 32 32 H 1.09004 * 113.61478 * 139.97902 * 18 17 16 33 33 H 1.09006 * 113.61169 * 254.52891 * 19 16 13 34 34 H 1.08997 * 113.61361 * 25.34670 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2303 1.1874 -0.0081 5 6 1.4557 2.3906 0.0105 6 7 0.1497 2.3941 0.1565 7 14 2.3780 4.0034 -0.1833 8 1 3.8300 3.7288 -0.3300 9 1 1.8839 4.7145 -1.3897 10 1 2.1535 4.8493 1.0165 11 6 2.1389 -1.1671 0.0005 12 8 1.5353 -2.2160 -0.0824 13 6 3.6423 -1.1690 0.1043 14 6 4.2485 -0.8609 -1.2662 15 8 4.0563 -0.1743 1.0429 16 6 4.1193 -2.5444 0.5752 17 6 4.0459 -2.7332 2.0996 18 6 5.3941 -3.4655 1.9949 19 6 5.6470 -2.6525 0.7139 20 1 -0.3633 -1.0230 -0.0985 21 1 -0.3634 0.4263 0.9350 22 1 -0.3634 0.5966 -0.8368 23 1 -0.3353 3.2341 0.1635 24 1 3.9327 -1.6196 -1.9821 25 1 3.9088 0.1190 -1.6018 26 1 5.3360 -0.8618 -1.1911 27 1 3.7086 -0.3066 1.9354 28 1 3.6733 -3.3640 0.0118 29 1 4.0988 -1.7988 2.6584 30 1 3.2248 -3.3739 2.4213 31 1 5.2965 -4.5369 1.8196 32 1 6.0835 -3.2292 2.8055 33 1 6.1181 -3.2281 -0.0830 34 1 6.1380 -1.6958 0.8921 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813431107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:28 Heat of formation + Delta-G solvation = -48.239994 kcal Electronic energy + Delta-G solvation = -17059.347302 eV Core-core repulsion = 14379.853158 eV Total energy + Delta-G solvation = -2679.494144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.88992 -37.64700 -35.20899 -34.64685 -31.27460 -30.65341 -26.42847 -25.73024 -24.87984 -24.50277 -21.63024 -19.17320 -18.69912 -17.67905 -16.88202 -15.44403 -14.82785 -14.50748 -14.28970 -14.04381 -13.20221 -13.03853 -12.81550 -12.14989 -11.87696 -11.73823 -11.58619 -11.33554 -11.29560 -11.10731 -11.02037 -10.89823 -10.51611 -10.29010 -10.18242 -9.93768 -9.85172 -9.22472 -9.02593 -7.98875 -7.85336 -6.20346 -3.75691 3.13593 3.25031 3.30626 3.85378 4.13614 4.65725 4.91890 4.96709 5.01522 5.13043 5.20145 5.31387 5.69467 5.92525 6.00046 6.04965 6.13266 6.13910 6.14920 6.31805 6.36751 6.50357 6.61368 6.78004 6.91724 6.93362 7.29050 7.51441 7.66440 7.82769 8.25733 8.54965 9.16416 9.60208 9.96952 10.73932 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.009791 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.301551 B = 2859.174170 C = 3276.408915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.431 5.431 3 C -0.321 4.321 4 H 0.133 0.867 5 C 0.023 3.977 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.267 1.267 9 H -0.283 1.283 10 H -0.283 1.283 11 C 0.415 3.585 12 O -0.616 6.616 13 C 0.146 3.854 14 C -0.133 4.133 15 O -0.537 6.537 16 C -0.115 4.115 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.132 4.132 20 H 0.032 0.968 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.263 0.737 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.369 0.631 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 -4.546 1.603 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.147 5.147 3 C -0.448 4.448 4 H 0.150 0.850 5 C -0.179 4.179 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.191 1.191 9 H -0.209 1.209 10 H -0.209 1.209 11 C 0.203 3.797 12 O -0.505 6.505 13 C 0.102 3.898 14 C -0.190 4.190 15 O -0.344 6.344 16 C -0.134 4.134 17 C -0.175 4.175 18 C -0.177 4.177 19 C -0.170 4.170 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.218 0.782 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.953 -4.621 1.052 9.258 hybrid contribution -0.144 0.834 0.427 0.948 sum 7.808 -3.787 1.479 8.803 Atomic orbital electron populations 1.21581 0.80228 0.97323 1.03330 1.43877 1.06126 1.05145 1.59563 1.20689 0.94066 0.81985 1.48101 0.84965 1.25401 0.95666 0.99904 0.96944 1.70260 1.06482 1.26710 1.48988 0.85862 0.79702 0.81430 0.77729 1.19082 1.20924 1.20932 1.20600 0.89852 0.83848 0.85398 1.90499 1.69866 1.31589 1.58541 1.20846 0.91155 0.87122 0.90658 1.21692 1.00252 1.03235 0.93867 1.86544 1.75307 1.50331 1.22233 1.22967 0.95562 0.98191 0.96688 1.22888 0.97377 1.00500 0.96744 1.22759 0.97679 0.99024 0.98264 1.22931 0.96346 1.00394 0.97295 0.94951 0.91978 0.91474 0.92621 0.91838 0.90566 0.92205 0.78160 0.88110 0.90225 0.91567 0.90687 0.91921 0.92118 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.06 8.87 59.85 0.53 3.59 16 2 N -0.43 -11.15 3.03 -122.20 -0.37 -11.52 16 3 C -0.32 -8.21 8.05 -14.93 -0.12 -8.33 16 4 H 0.13 3.28 4.20 -52.49 -0.22 3.06 16 5 C 0.02 0.59 5.42 -17.47 -0.09 0.50 16 6 N -0.88 -23.50 9.48 55.50 0.53 -22.98 16 7 Si 0.93 20.18 29.56 -169.99 -5.02 15.15 16 8 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.42 10.12 6.58 -10.99 -0.07 10.05 16 12 O -0.62 -16.41 15.22 5.54 0.08 -16.32 16 13 C 0.15 2.89 0.54 -91.77 -0.05 2.84 16 14 C -0.13 -2.44 8.40 37.16 0.31 -2.13 16 15 O -0.54 -10.45 9.11 -35.23 -0.32 -10.77 16 16 C -0.11 -1.97 2.68 -89.81 -0.24 -2.21 16 17 C -0.14 -2.13 7.40 -25.92 -0.19 -2.32 16 18 C -0.14 -1.80 8.08 -25.90 -0.21 -2.01 16 19 C -0.13 -1.85 6.58 -25.90 -0.17 -2.02 16 20 H 0.03 0.82 6.91 -51.93 -0.36 0.46 16 21 H 0.06 1.64 7.17 -51.93 -0.37 1.27 16 22 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 23 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.08 1.52 6.66 -51.93 -0.35 1.18 16 26 H 0.06 0.95 7.45 -51.93 -0.39 0.56 16 27 H 0.37 6.62 6.81 45.56 0.31 6.93 16 28 H 0.10 1.88 7.64 -51.93 -0.40 1.48 16 29 H 0.08 1.18 5.90 -51.93 -0.31 0.87 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.23 7.77 -51.93 -0.40 0.83 16 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -29.00 266.76 -5.48 -34.48 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.09 Total: 10.00 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.31 Total: -2.05 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.16 Total: -34.50 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.24 Total: -27.09 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.00 -5.48 -34.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.762 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds