Wall clock time and date at job start Thu Apr 9 2020 11:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37102 * 119.99518 * 2 1 4 4 H 1.07997 * 119.99456 * 180.49384 * 3 2 1 5 5 C 1.38943 * 120.00267 * 0.49930 * 3 2 1 6 6 N 1.31414 * 120.00339 * 6.87101 * 5 3 2 7 7 Si 1.86798 * 120.00175 * 186.88060 * 5 3 2 8 8 H 1.48499 * 109.47124 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47615 * 119.99681 * 7 5 3 10 10 H 1.48506 * 109.47059 * 239.99693 * 7 5 3 11 11 C 1.34772 * 120.00424 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99741 * 4.55488 * 11 2 1 13 13 C 1.50698 * 120.00040 * 184.56180 * 11 2 1 14 14 C 1.52997 * 109.46999 * 280.10784 * 13 11 2 15 15 O 1.42890 * 109.47514 * 40.11225 * 13 11 2 16 16 C 1.53002 * 109.47219 * 160.11377 * 13 11 2 17 17 C 1.53778 * 113.61580 * 277.49707 * 16 13 11 18 18 C 1.53779 * 87.08368 * 220.01775 * 17 16 13 19 19 C 1.53777 * 113.61705 * 179.97438 * 16 13 11 20 20 H 1.09000 * 109.46682 * 174.50222 * 1 2 3 21 21 H 1.08994 * 109.47553 * 294.50822 * 1 2 3 22 22 H 1.09006 * 109.47151 * 54.51127 * 1 2 3 23 23 H 0.96996 * 120.00359 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.47438 * 300.00537 * 14 13 11 25 25 H 1.09004 * 109.47244 * 60.00241 * 14 13 11 26 26 H 1.09003 * 109.47173 * 179.97438 * 14 13 11 27 27 H 0.96702 * 114.00351 * 60.00028 * 15 13 11 28 28 H 1.09001 * 112.90627 * 48.74710 * 16 13 11 29 29 H 1.09005 * 113.61365 * 334.56831 * 17 16 13 30 30 H 1.09000 * 113.61662 * 105.46599 * 17 16 13 31 31 H 1.08997 * 113.60949 * 270.87995 * 18 17 16 32 32 H 1.09004 * 113.61478 * 139.97902 * 18 17 16 33 33 H 1.09006 * 113.61169 * 254.52891 * 19 16 13 34 34 H 1.08997 * 113.61361 * 25.34670 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2303 1.1874 -0.0081 5 6 1.4557 2.3906 0.0105 6 7 0.1497 2.3941 0.1565 7 14 2.3780 4.0034 -0.1833 8 1 3.8300 3.7288 -0.3300 9 1 1.8839 4.7145 -1.3897 10 1 2.1535 4.8493 1.0165 11 6 2.1389 -1.1671 0.0005 12 8 1.5353 -2.2160 -0.0824 13 6 3.6423 -1.1690 0.1043 14 6 4.2485 -0.8609 -1.2662 15 8 4.0563 -0.1743 1.0429 16 6 4.1193 -2.5444 0.5752 17 6 4.0459 -2.7332 2.0996 18 6 5.3941 -3.4655 1.9949 19 6 5.6470 -2.6525 0.7139 20 1 -0.3633 -1.0230 -0.0985 21 1 -0.3634 0.4263 0.9350 22 1 -0.3634 0.5966 -0.8368 23 1 -0.3353 3.2341 0.1635 24 1 3.9327 -1.6196 -1.9821 25 1 3.9088 0.1190 -1.6018 26 1 5.3360 -0.8618 -1.1911 27 1 3.7086 -0.3066 1.9354 28 1 3.6733 -3.3640 0.0118 29 1 4.0988 -1.7988 2.6584 30 1 3.2248 -3.3739 2.4213 31 1 5.2965 -4.5369 1.8196 32 1 6.0835 -3.2292 2.8055 33 1 6.1181 -3.2281 -0.0830 34 1 6.1380 -1.6958 0.8921 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813431107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:27 Heat of formation + Delta-G solvation = -67.117754 kcal Electronic energy + Delta-G solvation = -17060.165903 eV Core-core repulsion = 14379.853158 eV Total energy + Delta-G solvation = -2680.312745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48035 -39.29211 -36.92997 -36.44657 -33.26954 -32.18836 -28.43859 -27.11044 -26.34935 -26.10106 -23.20234 -20.95599 -20.05478 -19.47637 -18.52924 -17.01976 -16.48090 -16.25264 -16.04084 -15.80749 -14.93124 -14.75851 -14.20473 -13.59918 -13.37089 -13.35956 -13.23085 -13.08149 -12.95065 -12.74684 -12.60451 -12.47499 -12.32037 -11.99405 -11.55233 -11.33164 -11.14254 -11.01188 -10.77582 -9.90051 -9.83886 -8.16675 -5.78305 1.40349 1.48158 1.62012 1.95756 2.31719 2.92618 3.19123 3.45600 3.72945 3.78599 3.91355 4.02992 4.25843 4.40697 4.59479 4.76774 4.81530 4.89931 4.94143 4.99102 5.04536 5.11102 5.13926 5.15640 5.31289 5.39608 5.43920 5.66719 5.69631 5.83366 6.54078 6.73418 7.18677 7.63633 7.99329 8.79123 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034167 B = 0.009791 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.301551 B = 2859.174170 C = 3276.408915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.448 5.448 3 C -0.330 4.330 4 H 0.143 0.857 5 C -0.024 4.024 6 N -0.913 5.913 7 Si 0.993 3.007 8 H -0.255 1.255 9 H -0.284 1.284 10 H -0.282 1.282 11 C 0.408 3.592 12 O -0.644 6.644 13 C 0.152 3.848 14 C -0.131 4.131 15 O -0.537 6.537 16 C -0.124 4.124 17 C -0.145 4.145 18 C -0.124 4.124 19 C -0.119 4.119 20 H 0.028 0.972 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.264 0.736 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.375 0.625 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.628 -4.371 1.859 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.164 5.164 3 C -0.457 4.457 4 H 0.160 0.840 5 C -0.223 4.223 6 N -0.555 5.555 7 Si 0.818 3.182 8 H -0.179 1.179 9 H -0.210 1.210 10 H -0.208 1.208 11 C 0.197 3.803 12 O -0.534 6.534 13 C 0.108 3.892 14 C -0.188 4.188 15 O -0.345 6.345 16 C -0.144 4.144 17 C -0.183 4.183 18 C -0.161 4.161 19 C -0.156 4.156 20 H 0.046 0.954 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.225 0.775 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.474 -4.457 1.314 11.458 hybrid contribution -0.996 0.717 0.353 1.277 sum 9.477 -3.740 1.667 10.324 Atomic orbital electron populations 1.21318 0.81181 0.96473 1.02099 1.44145 1.05959 1.06077 1.60259 1.20981 0.94537 0.81953 1.48260 0.84019 1.26282 0.96474 1.03032 0.96545 1.70370 1.07821 1.27497 1.49797 0.84840 0.78943 0.77115 0.77352 1.17890 1.20968 1.20816 1.21623 0.92089 0.82857 0.83745 1.90469 1.71155 1.32491 1.59306 1.20851 0.87652 0.88946 0.91741 1.21696 1.02069 1.02174 0.92867 1.86510 1.74871 1.50526 1.22601 1.22977 0.98259 0.95627 0.97488 1.22970 0.98784 1.01029 0.95490 1.22710 0.95904 0.99221 0.98303 1.22881 0.93348 1.01028 0.98370 0.95358 0.93172 0.92732 0.92581 0.91564 0.92426 0.89125 0.77511 0.89971 0.89741 0.93054 0.89665 0.89841 0.90397 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.08 8.87 127.77 1.13 8.21 16 2 N -0.45 -23.48 3.03 -658.90 -1.99 -25.47 16 3 C -0.33 -16.82 8.05 84.04 0.68 -16.14 16 4 H 0.14 6.86 4.20 -2.91 -0.01 6.84 16 5 C -0.02 -1.25 5.42 84.92 0.46 -0.79 16 6 N -0.91 -49.12 9.48 21.66 0.21 -48.91 16 7 Si 0.99 40.76 29.56 68.60 2.03 42.79 16 8 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 C 0.41 19.98 6.58 87.66 0.58 20.56 16 12 O -0.64 -34.87 15.22 -3.09 -0.05 -34.92 16 13 C 0.15 5.84 0.54 -11.54 -0.01 5.83 16 14 C -0.13 -4.57 8.40 71.98 0.60 -3.97 16 15 O -0.54 -19.97 9.11 -148.98 -1.36 -21.33 16 16 C -0.12 -4.07 2.68 -10.27 -0.03 -4.09 16 17 C -0.15 -4.25 7.40 31.12 0.23 -4.02 16 18 C -0.12 -2.78 8.08 31.13 0.25 -2.53 16 19 C -0.12 -2.91 6.58 31.13 0.20 -2.71 16 20 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 21 H 0.05 2.74 7.17 -2.39 -0.02 2.73 16 22 H 0.05 3.00 6.92 -2.38 -0.02 2.98 16 23 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.22 6.66 -2.39 -0.02 2.20 16 26 H 0.09 2.59 7.45 -2.39 -0.02 2.57 16 27 H 0.37 12.95 6.81 -74.06 -0.50 12.45 16 28 H 0.08 3.00 7.64 -2.39 -0.02 2.99 16 29 H 0.08 2.36 5.90 -2.38 -0.01 2.35 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 2.19 7.77 -2.39 -0.02 2.17 16 Total: -1.00 -61.68 266.76 3.54 -58.13 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.60 Total: 29.35 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.10 Total: 0.35 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.79 Total: -74.38 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -1.40 Total: -56.24 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -61.68 3.54 -58.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.984 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds