Wall clock time and date at job start Thu Apr 9 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 H 1.09002 * 109.47059 * 175.21768 * 3 2 1 5 5 C 1.50707 * 109.47124 * 55.22342 * 3 2 1 6 6 H 1.07995 * 119.99686 * 245.72704 * 5 3 2 7 7 C 1.37881 * 120.00003 * 65.72337 * 5 3 2 8 8 N 1.31516 * 119.99892 * 5.52433 * 7 5 3 9 9 Si 1.86796 * 119.99561 * 185.24235 * 7 5 3 10 10 H 1.48497 * 109.47245 * 270.27555 * 9 7 5 11 11 H 1.48500 * 109.47249 * 30.27821 * 9 7 5 12 12 H 1.48507 * 109.46635 * 150.27534 * 9 7 5 13 13 N 1.46896 * 109.47364 * 295.22068 * 3 2 1 14 14 C 1.46903 * 110.99995 * 279.79746 * 13 3 2 15 15 C 1.52995 * 109.47284 * 184.97861 * 14 13 3 16 16 H 1.09005 * 110.01111 * 305.07690 * 15 14 13 17 17 C 1.54267 * 110.02642 * 183.65668 * 15 14 13 18 18 C 1.54720 * 102.25467 * 225.51381 * 17 15 14 19 19 C 1.51665 * 103.01005 * 25.20894 * 18 17 15 20 20 O 1.20833 * 125.69536 * 151.50381 * 19 18 17 21 21 O 1.33999 * 108.60507 * 331.46940 * 19 18 17 22 22 H 1.08993 * 109.47001 * 184.94695 * 1 2 3 23 23 H 1.09006 * 109.47396 * 304.94912 * 1 2 3 24 24 H 1.08997 * 109.47148 * 64.94666 * 1 2 3 25 25 H 1.08994 * 109.47115 * 240.00127 * 2 1 3 26 26 H 1.09000 * 109.46942 * 119.99778 * 2 1 3 27 27 H 0.96995 * 119.99974 * 354.87344 * 8 7 5 28 28 H 1.00894 * 110.99929 * 155.84790 * 13 3 2 29 29 H 1.09002 * 109.47194 * 304.98337 * 14 13 3 30 30 H 1.09004 * 109.46659 * 64.97981 * 14 13 3 31 31 H 1.08997 * 110.84423 * 343.70233 * 17 15 14 32 32 H 1.08991 * 110.84983 * 107.32373 * 17 15 14 33 33 H 1.08994 * 110.71193 * 266.82316 * 18 17 15 34 34 H 1.09008 * 110.85402 * 143.65799 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1266 1.4438 0.0857 5 6 1.4433 2.1863 1.1671 6 1 0.7590 3.0036 0.9936 7 6 1.7710 1.8233 2.4562 8 7 2.6854 0.9019 2.6676 9 14 0.9219 2.6457 3.9025 10 1 1.6883 3.8520 4.3059 11 1 -0.4540 3.0421 3.5087 12 1 0.8563 1.6967 5.0429 13 7 1.6468 2.1010 -1.2529 14 6 2.5540 1.7330 -2.3482 15 6 2.1898 2.5307 -3.6019 16 1 1.1378 2.3824 -3.8459 17 6 3.0750 2.0882 -4.7853 18 6 3.5025 3.4422 -5.3999 19 6 3.3977 4.3979 -4.2269 20 8 4.0529 5.4018 -4.0747 21 8 2.4568 3.9436 -3.3880 22 1 -0.3633 -1.0238 0.0886 23 1 -0.3634 0.5887 0.8424 24 1 -0.3633 0.4352 -0.9309 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0757 0.4251 1.9185 28 1 1.6065 3.1025 -1.1379 29 1 3.5811 1.9575 -2.0602 30 1 2.4596 0.6671 -2.5556 31 1 3.9430 1.5308 -4.4332 32 1 2.5002 1.5014 -5.5015 33 1 2.8208 3.7356 -6.1982 34 1 4.5274 3.3949 -5.7682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852156819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:56 Heat of formation + Delta-G solvation = -96.738292 kcal Electronic energy + Delta-G solvation = -16101.578055 eV Core-core repulsion = 13419.980867 eV Total energy + Delta-G solvation = -2681.597188 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93113 -37.70825 -36.41378 -33.50493 -32.61882 -30.84879 -28.68596 -25.63718 -23.65406 -23.20776 -22.18861 -20.63053 -19.26756 -17.46604 -17.16021 -16.75846 -15.66912 -14.73222 -14.63233 -14.14823 -13.73023 -13.55961 -13.43302 -12.91859 -12.51218 -12.40544 -12.10455 -11.83037 -11.52449 -11.28941 -11.01713 -10.75549 -10.42708 -10.19656 -10.16625 -10.09261 -9.88209 -9.74642 -8.53549 -8.30492 -7.46828 -6.34460 -4.06293 2.03944 3.26266 3.44721 3.48070 3.63630 3.85351 4.13348 4.40659 4.53743 4.67167 5.06496 5.24270 5.32606 5.37913 5.43003 5.46494 5.68391 5.89720 6.08832 6.27516 6.36607 6.56903 6.88442 6.90824 7.01463 7.21384 7.41206 7.46350 7.54179 7.83703 8.07306 8.48568 8.56962 8.87414 9.64301 11.02320 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.006616 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.360558 B = 4231.146949 C = 4707.486252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.203 3.797 4 H -0.009 1.009 5 C -0.590 4.590 6 H 0.055 0.945 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.050 3.950 15 C 0.086 3.914 16 H 0.114 0.886 17 C -0.150 4.150 18 C -0.187 4.187 19 C 0.482 3.518 20 O -0.462 6.462 21 O -0.340 6.340 22 H 0.017 0.983 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.270 0.730 28 H 0.342 0.658 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -0.423 -14.869 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.629 4.629 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.309 5.309 14 C -0.081 4.081 15 C 0.030 3.970 16 H 0.132 0.868 17 C -0.188 4.188 18 C -0.226 4.226 19 C 0.322 3.678 20 O -0.346 6.346 21 O -0.256 6.256 22 H 0.036 0.964 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.025 -0.248 -13.114 13.157 hybrid contribution 0.893 0.244 -1.596 1.845 sum -0.132 -0.004 -14.710 14.711 Atomic orbital electron populations 1.21456 0.96339 0.97883 1.02098 1.21532 0.96525 0.98241 0.98316 1.19290 0.93170 0.91661 0.86427 0.99135 1.21942 1.30607 1.18650 0.91674 0.92654 1.25721 0.95480 0.96912 1.00120 1.70773 1.24349 1.24162 1.35744 0.83543 0.75627 0.75704 0.75378 1.21570 1.21332 1.21056 1.60661 1.49698 1.14252 1.06272 1.22342 0.95485 0.98881 0.91363 1.23797 1.01313 0.76005 0.95861 0.86805 1.23010 1.01277 0.96995 0.97527 1.23083 1.05675 0.95140 0.98655 1.23203 0.76232 0.84951 0.83380 1.90710 1.40468 1.26244 1.77186 1.86860 1.52804 1.27653 1.58316 0.96383 0.91716 0.93617 0.96213 0.92335 0.91769 0.83950 0.95460 0.89700 0.89146 0.88227 0.86893 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.53 37.16 0.35 -2.23 16 2 C -0.11 -2.45 5.47 -26.73 -0.15 -2.60 16 3 C 0.20 4.95 1.92 -68.86 -0.13 4.81 16 4 H -0.01 -0.24 7.32 -51.93 -0.38 -0.62 16 5 C -0.59 -16.10 6.93 -34.44 -0.24 -16.34 16 6 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 7 C 0.02 0.62 5.28 -17.82 -0.09 0.52 16 8 N -0.91 -27.04 13.21 55.43 0.73 -26.31 16 9 Si 1.07 25.18 29.91 -169.99 -5.08 20.10 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -13.91 5.86 -107.95 -0.63 -14.54 16 14 C 0.05 0.80 5.07 -3.83 -0.02 0.78 16 15 C 0.09 1.08 3.88 -26.07 -0.10 0.98 16 16 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.15 -1.29 6.70 -25.16 -0.17 -1.46 16 18 C -0.19 -1.68 6.97 -26.50 -0.18 -1.87 16 19 C 0.48 7.03 8.62 36.48 0.31 7.35 16 20 O -0.46 -8.40 18.00 -18.38 -0.33 -8.73 16 21 O -0.34 -5.35 10.18 -38.27 -0.39 -5.74 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 1.53 6.89 -51.93 -0.36 1.17 16 24 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 25 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 26 H 0.06 1.47 6.17 -51.93 -0.32 1.15 16 27 H 0.27 7.94 5.62 -40.82 -0.23 7.71 16 28 H 0.34 7.43 7.90 -39.29 -0.31 7.12 16 29 H 0.03 0.48 7.95 -51.93 -0.41 0.07 16 30 H 0.08 1.28 7.20 -51.93 -0.37 0.90 16 31 H 0.09 0.76 7.79 -51.93 -0.40 0.35 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 0.83 8.14 -51.92 -0.42 0.40 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -31.63 279.15 -6.80 -38.43 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.89 Total: 2.63 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.42 Total: -10.05 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.10 Total: -40.85 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.72 Total: -14.47 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.63 -6.80 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.311 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds