Wall clock time and date at job start Thu Apr 9 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 H 1.09002 * 109.47059 * 175.21768 * 3 2 1 5 5 C 1.50707 * 109.47124 * 55.22342 * 3 2 1 6 6 H 1.07995 * 119.99686 * 245.72704 * 5 3 2 7 7 C 1.37881 * 120.00003 * 65.72337 * 5 3 2 8 8 N 1.31516 * 119.99892 * 5.52433 * 7 5 3 9 9 Si 1.86796 * 119.99561 * 185.24235 * 7 5 3 10 10 H 1.48497 * 109.47245 * 270.27555 * 9 7 5 11 11 H 1.48500 * 109.47249 * 30.27821 * 9 7 5 12 12 H 1.48507 * 109.46635 * 150.27534 * 9 7 5 13 13 N 1.46896 * 109.47364 * 295.22068 * 3 2 1 14 14 C 1.46903 * 110.99995 * 279.79746 * 13 3 2 15 15 C 1.52995 * 109.47284 * 184.97861 * 14 13 3 16 16 H 1.09005 * 110.01111 * 305.07690 * 15 14 13 17 17 C 1.54267 * 110.02642 * 183.65668 * 15 14 13 18 18 C 1.54720 * 102.25467 * 225.51381 * 17 15 14 19 19 C 1.51665 * 103.01005 * 25.20894 * 18 17 15 20 20 O 1.20833 * 125.69536 * 151.50381 * 19 18 17 21 21 O 1.33999 * 108.60507 * 331.46940 * 19 18 17 22 22 H 1.08993 * 109.47001 * 184.94695 * 1 2 3 23 23 H 1.09006 * 109.47396 * 304.94912 * 1 2 3 24 24 H 1.08997 * 109.47148 * 64.94666 * 1 2 3 25 25 H 1.08994 * 109.47115 * 240.00127 * 2 1 3 26 26 H 1.09000 * 109.46942 * 119.99778 * 2 1 3 27 27 H 0.96995 * 119.99974 * 354.87344 * 8 7 5 28 28 H 1.00894 * 110.99929 * 155.84790 * 13 3 2 29 29 H 1.09002 * 109.47194 * 304.98337 * 14 13 3 30 30 H 1.09004 * 109.46659 * 64.97981 * 14 13 3 31 31 H 1.08997 * 110.84423 * 343.70233 * 17 15 14 32 32 H 1.08991 * 110.84983 * 107.32373 * 17 15 14 33 33 H 1.08994 * 110.71193 * 266.82316 * 18 17 15 34 34 H 1.09008 * 110.85402 * 143.65799 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1266 1.4438 0.0857 5 6 1.4433 2.1863 1.1671 6 1 0.7590 3.0036 0.9936 7 6 1.7710 1.8233 2.4562 8 7 2.6854 0.9019 2.6676 9 14 0.9219 2.6457 3.9025 10 1 1.6883 3.8520 4.3059 11 1 -0.4540 3.0421 3.5087 12 1 0.8563 1.6967 5.0429 13 7 1.6468 2.1010 -1.2529 14 6 2.5540 1.7330 -2.3482 15 6 2.1898 2.5307 -3.6019 16 1 1.1378 2.3824 -3.8459 17 6 3.0750 2.0882 -4.7853 18 6 3.5025 3.4422 -5.3999 19 6 3.3977 4.3979 -4.2269 20 8 4.0529 5.4018 -4.0747 21 8 2.4568 3.9436 -3.3880 22 1 -0.3633 -1.0238 0.0886 23 1 -0.3634 0.5887 0.8424 24 1 -0.3633 0.4352 -0.9309 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0757 0.4251 1.9185 28 1 1.6065 3.1025 -1.1379 29 1 3.5811 1.9575 -2.0602 30 1 2.4596 0.6671 -2.5556 31 1 3.9430 1.5308 -4.4332 32 1 2.5002 1.5014 -5.5015 33 1 2.8208 3.7356 -6.1982 34 1 4.5274 3.3949 -5.7682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852156819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:55 Heat of formation + Delta-G solvation = -118.286830 kcal Electronic energy + Delta-G solvation = -16102.512470 eV Core-core repulsion = 13419.980867 eV Total energy + Delta-G solvation = -2682.531603 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00436 -39.01370 -38.13453 -34.98359 -33.87349 -32.64593 -30.04271 -27.40433 -25.52001 -24.58946 -23.16051 -21.77919 -21.09045 -19.04526 -18.47204 -17.98040 -16.87574 -16.35352 -16.15235 -15.70042 -15.39305 -15.05885 -14.58821 -14.28888 -13.96658 -13.69299 -13.48904 -13.21065 -13.08690 -12.63507 -12.42625 -12.36200 -11.96396 -11.95427 -11.85051 -11.60945 -11.32018 -11.26607 -10.60952 -10.39766 -9.21429 -8.57787 -6.29707 0.94691 1.52475 1.60193 1.77983 2.22377 2.55808 2.94919 3.21323 3.26973 3.45282 3.84881 3.96185 4.20427 4.32367 4.37345 4.53564 4.60838 4.70017 4.72729 4.78230 4.94216 5.02206 5.07336 5.20875 5.39321 5.51334 5.73639 5.84350 5.90113 6.07804 6.36663 6.47115 6.57128 6.77069 7.48662 8.79654 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.006616 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.360558 B = 4231.146949 C = 4707.486252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C 0.205 3.795 4 H -0.047 1.047 5 C -0.596 4.596 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.939 5.939 9 Si 1.110 2.890 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.283 1.283 13 N -0.672 5.672 14 C 0.047 3.953 15 C 0.087 3.913 16 H 0.132 0.868 17 C -0.136 4.136 18 C -0.168 4.168 19 C 0.470 3.530 20 O -0.513 6.513 21 O -0.374 6.374 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.006 0.994 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -1.255 -17.024 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.096 3.904 4 H -0.029 1.029 5 C -0.635 4.635 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.577 5.577 9 Si 0.933 3.067 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.208 1.208 13 N -0.302 5.302 14 C -0.083 4.083 15 C 0.032 3.968 16 H 0.150 0.850 17 C -0.174 4.174 18 C -0.206 4.206 19 C 0.314 3.686 20 O -0.401 6.401 21 O -0.291 6.291 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.025 0.975 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.077 -1.100 -15.305 15.484 hybrid contribution 1.224 0.505 -0.965 1.638 sum -0.854 -0.595 -16.270 16.303 Atomic orbital electron populations 1.21344 0.94909 0.99037 1.01529 1.21406 0.97635 0.96727 0.98208 1.19140 0.90695 0.92968 0.87603 1.02934 1.22240 1.29931 1.18354 0.92949 0.93511 1.26999 0.95427 0.96919 1.03068 1.70877 1.25902 1.25546 1.35376 0.83008 0.75654 0.75165 0.72834 1.20697 1.19532 1.20847 1.60625 1.50737 1.13196 1.05622 1.22509 0.93486 1.00728 0.91536 1.23905 1.03267 0.74263 0.95345 0.85048 1.23081 1.01048 0.97035 0.96207 1.23124 1.07713 0.93122 0.96630 1.24243 0.74876 0.84909 0.84598 1.90669 1.42229 1.28754 1.78480 1.86816 1.53178 1.29369 1.59707 0.93936 0.94527 0.92230 0.93563 0.95119 0.92867 0.85125 0.97536 0.87827 0.88849 0.84096 0.83696 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.53 71.98 0.69 -3.90 16 2 C -0.10 -4.58 5.47 30.60 0.17 -4.41 16 3 C 0.20 10.19 1.92 44.17 0.08 10.27 16 4 H -0.05 -2.63 7.32 -2.39 -0.02 -2.65 16 5 C -0.60 -33.18 6.93 25.60 0.18 -33.00 16 6 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 7 C -0.03 -1.45 5.28 84.66 0.45 -1.00 16 8 N -0.94 -56.97 13.21 21.45 0.28 -56.69 16 9 Si 1.11 51.02 29.91 68.60 2.05 53.07 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.67 -27.49 5.86 -495.43 -2.90 -30.39 16 14 C 0.05 1.47 5.07 86.30 0.44 1.91 16 15 C 0.09 1.98 3.88 31.02 0.12 2.10 16 16 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 17 C -0.14 -1.75 6.70 31.61 0.21 -1.53 16 18 C -0.17 -2.40 6.97 30.74 0.21 -2.18 16 19 C 0.47 13.35 8.62 71.54 0.62 13.96 16 20 O -0.51 -19.07 18.00 21.58 0.39 -18.68 16 21 O -0.37 -11.55 10.18 -49.59 -0.50 -12.06 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.70 6.89 -2.38 -0.02 1.68 16 24 H 0.06 2.27 7.89 -2.39 -0.02 2.25 16 25 H 0.05 1.81 7.13 -2.39 -0.02 1.80 16 26 H 0.03 1.55 6.17 -2.39 -0.01 1.53 16 27 H 0.26 15.88 5.62 -92.71 -0.52 15.36 16 28 H 0.33 14.66 7.90 -89.70 -0.71 13.95 16 29 H 0.01 0.23 7.95 -2.39 -0.02 0.21 16 30 H 0.10 2.85 7.20 -2.38 -0.02 2.83 16 31 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 32 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -72.21 279.15 3.11 -69.10 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.63 Total: 13.44 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.16 Total: -17.79 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.62 Total: -87.08 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.12 Total: -30.73 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -72.21 3.11 -69.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.190 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds