Wall clock time and date at job start Thu Apr 9 2020 11:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 H 1.08994 * 109.46986 * 184.28064 * 3 2 1 5 5 C 1.50702 * 109.47080 * 304.28835 * 3 2 1 6 6 H 1.07993 * 120.00361 * 119.99874 * 5 3 2 7 7 C 1.37885 * 119.99297 * 299.99788 * 5 3 2 8 8 N 1.31511 * 120.00139 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99377 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47350 * 60.00315 * 9 7 5 11 11 H 1.48500 * 109.46932 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47228 * 299.99715 * 9 7 5 13 13 N 1.46906 * 109.46944 * 64.28366 * 3 2 1 14 14 C 1.46895 * 111.00082 * 86.18473 * 13 3 2 15 15 C 1.53001 * 109.47264 * 183.45464 * 14 13 3 16 16 H 1.08993 * 110.00848 * 305.07700 * 15 14 13 17 17 C 1.54258 * 110.02659 * 183.64869 * 15 14 13 18 18 C 1.54720 * 102.26182 * 225.51731 * 17 15 14 19 19 C 1.51659 * 103.00828 * 25.20690 * 18 17 15 20 20 O 1.20827 * 125.69606 * 151.50591 * 19 18 17 21 21 O 1.34005 * 108.60953 * 331.47573 * 19 18 17 22 22 H 1.09007 * 109.46986 * 294.43092 * 1 2 3 23 23 H 1.08999 * 109.47133 * 54.42937 * 1 2 3 24 24 H 1.09000 * 109.47205 * 174.43174 * 1 2 3 25 25 H 1.08992 * 109.47102 * 240.00118 * 2 1 3 26 26 H 1.09001 * 109.46900 * 119.99578 * 2 1 3 27 27 H 0.96999 * 119.99695 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00035 * 322.22713 * 13 3 2 29 29 H 1.09004 * 109.46889 * 303.45359 * 14 13 3 30 30 H 1.09000 * 109.47027 * 63.45174 * 14 13 3 31 31 H 1.08998 * 110.84849 * 343.70931 * 17 15 14 32 32 H 1.08999 * 110.84733 * 107.32897 * 17 15 14 33 33 H 1.08998 * 110.70612 * 266.82869 * 18 17 15 34 34 H 1.09002 * 110.85706 * 143.66293 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 -0.0767 5 6 1.4528 2.1830 -1.1739 6 1 0.8413 3.0577 -1.0095 7 6 1.6965 1.7434 -2.4579 8 7 2.4417 0.6785 -2.6581 9 14 0.9693 2.6616 -3.9131 10 1 1.4649 4.0615 -3.9130 11 1 1.3774 1.9927 -5.1745 12 1 -0.5120 2.6608 -3.8087 13 7 1.6366 2.1045 1.2479 14 6 2.6133 1.8541 2.3162 15 6 2.1174 2.4852 3.6188 16 1 1.9097 3.5440 3.4648 17 6 3.1754 2.3090 4.7274 18 6 2.3185 1.8428 5.9283 19 6 1.1124 1.2094 5.2617 20 8 0.4394 0.3180 5.7224 21 8 0.9175 1.8040 4.0767 22 1 -0.3633 0.4251 0.9357 23 1 -0.3633 0.5978 -0.8359 24 1 -0.3633 -1.0228 -0.0997 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.6134 0.3695 -3.5614 28 1 0.7117 1.8148 1.5283 29 1 2.7320 0.7795 2.4553 30 1 3.5725 2.2931 2.0418 31 1 3.9034 1.5463 4.4512 32 1 3.6684 3.2560 4.9472 33 1 2.0181 2.6931 6.5406 34 1 2.8572 1.1091 6.5279 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852156822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:59 Heat of formation + Delta-G solvation = -92.230608 kcal Electronic energy + Delta-G solvation = -16148.499450 eV Core-core repulsion = 13467.097729 eV Total energy + Delta-G solvation = -2681.401720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88499 -37.66951 -36.31511 -33.37809 -32.47561 -30.84266 -28.41592 -26.08795 -23.66359 -23.03185 -22.13597 -20.57135 -19.24552 -17.43356 -16.89252 -16.28507 -15.51454 -14.88061 -14.71847 -14.35304 -13.57297 -13.49690 -13.12908 -12.87028 -12.44171 -12.28363 -12.14380 -11.65234 -11.50649 -11.42235 -10.89585 -10.74127 -10.51036 -10.32269 -10.16237 -9.95078 -9.72824 -9.53607 -8.98914 -8.33598 -7.27191 -5.97034 -3.98773 2.07294 3.31180 3.35248 3.39465 3.42708 3.89889 4.19385 4.42428 4.52447 4.73176 5.14002 5.32107 5.34567 5.38444 5.53109 5.54631 5.77881 6.02733 6.17285 6.40462 6.42609 6.60335 6.93441 6.96909 7.25351 7.29879 7.49450 7.54417 7.71401 7.88299 8.27397 8.52679 8.60268 9.06473 9.64813 11.10017 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.006172 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.669519 B = 4535.704398 C = 4737.658522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.051 3.949 15 C 0.085 3.915 16 H 0.115 0.885 17 C -0.150 4.150 18 C -0.187 4.187 19 C 0.482 3.518 20 O -0.464 6.464 21 O -0.341 6.341 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.024 0.976 25 H 0.093 0.907 26 H 0.009 0.991 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 3.203 13.131 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.315 5.315 14 C -0.079 4.079 15 C 0.029 3.971 16 H 0.133 0.867 17 C -0.188 4.188 18 C -0.226 4.226 19 C 0.323 3.677 20 O -0.348 6.348 21 O -0.257 6.257 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.112 0.888 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.504 3.289 12.865 13.513 hybrid contribution -0.378 -0.517 -0.561 0.851 sum 2.126 2.772 12.305 12.791 Atomic orbital electron populations 1.21604 0.97593 0.98833 1.00857 1.22095 0.95149 1.01038 1.00192 1.19215 0.95761 0.88647 0.85614 0.95024 1.21023 1.30698 1.11529 0.89567 0.92005 1.24919 0.95510 0.95160 0.98784 1.69870 1.38695 1.23834 1.21248 0.86611 0.79522 0.79885 0.81666 1.20349 1.21530 1.20350 1.60925 1.04321 1.62941 1.03349 1.22306 0.97843 0.97794 0.89997 1.23851 0.81023 0.98041 0.94151 0.86744 1.23013 0.98225 1.04221 0.93347 1.23082 0.96417 1.03319 0.99776 1.23207 0.84247 0.79464 0.80824 1.90702 1.51693 1.25394 1.67038 1.86855 1.38588 1.63366 1.36897 0.95166 0.91253 0.95725 0.88843 0.97225 0.93052 0.84604 0.95494 0.89554 0.89109 0.88231 0.86938 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.40 37.16 0.35 -2.59 16 2 C -0.15 -3.47 5.52 -26.73 -0.15 -3.62 16 3 C 0.22 5.26 2.33 -68.86 -0.16 5.10 16 4 H 0.03 0.84 7.83 -51.93 -0.41 0.44 16 5 C -0.49 -13.15 7.28 -34.44 -0.25 -13.40 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.21 11.37 55.43 0.63 -24.58 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.17 6.26 -107.95 -0.68 -14.84 16 14 C 0.05 0.83 5.03 -3.83 -0.02 0.81 16 15 C 0.08 1.08 3.88 -26.07 -0.10 0.98 16 16 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.15 -1.31 6.69 -25.17 -0.17 -1.47 16 18 C -0.19 -1.69 6.97 -26.51 -0.18 -1.87 16 19 C 0.48 6.96 8.62 36.48 0.31 7.27 16 20 O -0.46 -8.31 18.00 -18.37 -0.33 -8.64 16 21 O -0.34 -5.31 10.20 -38.28 -0.39 -5.70 16 22 H 0.03 0.63 6.62 -51.92 -0.34 0.28 16 23 H 0.07 1.67 6.88 -51.93 -0.36 1.31 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 2.48 6.20 -51.93 -0.32 2.16 16 26 H 0.01 0.21 7.41 -51.93 -0.38 -0.18 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.34 7.05 6.15 -39.29 -0.24 6.81 16 29 H 0.03 0.47 7.39 -51.93 -0.38 0.08 16 30 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 31 H 0.09 0.77 7.79 -51.93 -0.40 0.36 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -30.34 278.94 -6.97 -37.31 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.92 Total: 3.35 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.46 Total: -7.34 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.05 Total: -39.42 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.72 Total: -14.34 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.34 -6.97 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.919 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds