Wall clock time and date at job start Thu Apr 9 2020 11:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 H 1.08994 * 109.46986 * 184.28064 * 3 2 1 5 5 C 1.50702 * 109.47080 * 304.28835 * 3 2 1 6 6 H 1.07993 * 120.00361 * 119.99874 * 5 3 2 7 7 C 1.37885 * 119.99297 * 299.99788 * 5 3 2 8 8 N 1.31511 * 120.00139 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99377 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47350 * 60.00315 * 9 7 5 11 11 H 1.48500 * 109.46932 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47228 * 299.99715 * 9 7 5 13 13 N 1.46906 * 109.46944 * 64.28366 * 3 2 1 14 14 C 1.46895 * 111.00082 * 86.18473 * 13 3 2 15 15 C 1.53001 * 109.47264 * 183.45464 * 14 13 3 16 16 H 1.08993 * 110.00848 * 305.07700 * 15 14 13 17 17 C 1.54258 * 110.02659 * 183.64869 * 15 14 13 18 18 C 1.54720 * 102.26182 * 225.51731 * 17 15 14 19 19 C 1.51659 * 103.00828 * 25.20690 * 18 17 15 20 20 O 1.20827 * 125.69606 * 151.50591 * 19 18 17 21 21 O 1.34005 * 108.60953 * 331.47573 * 19 18 17 22 22 H 1.09007 * 109.46986 * 294.43092 * 1 2 3 23 23 H 1.08999 * 109.47133 * 54.42937 * 1 2 3 24 24 H 1.09000 * 109.47205 * 174.43174 * 1 2 3 25 25 H 1.08992 * 109.47102 * 240.00118 * 2 1 3 26 26 H 1.09001 * 109.46900 * 119.99578 * 2 1 3 27 27 H 0.96999 * 119.99695 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00035 * 322.22713 * 13 3 2 29 29 H 1.09004 * 109.46889 * 303.45359 * 14 13 3 30 30 H 1.09000 * 109.47027 * 63.45174 * 14 13 3 31 31 H 1.08998 * 110.84849 * 343.70931 * 17 15 14 32 32 H 1.08999 * 110.84733 * 107.32897 * 17 15 14 33 33 H 1.08998 * 110.70612 * 266.82869 * 18 17 15 34 34 H 1.09002 * 110.85706 * 143.66293 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 -0.0767 5 6 1.4528 2.1830 -1.1739 6 1 0.8413 3.0577 -1.0095 7 6 1.6965 1.7434 -2.4579 8 7 2.4417 0.6785 -2.6581 9 14 0.9693 2.6616 -3.9131 10 1 1.4649 4.0615 -3.9130 11 1 1.3774 1.9927 -5.1745 12 1 -0.5120 2.6608 -3.8087 13 7 1.6366 2.1045 1.2479 14 6 2.6133 1.8541 2.3162 15 6 2.1174 2.4852 3.6188 16 1 1.9097 3.5440 3.4648 17 6 3.1754 2.3090 4.7274 18 6 2.3185 1.8428 5.9283 19 6 1.1124 1.2094 5.2617 20 8 0.4394 0.3180 5.7224 21 8 0.9175 1.8040 4.0767 22 1 -0.3633 0.4251 0.9357 23 1 -0.3633 0.5978 -0.8359 24 1 -0.3633 -1.0228 -0.0997 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.6134 0.3695 -3.5614 28 1 0.7117 1.8148 1.5283 29 1 2.7320 0.7795 2.4553 30 1 3.5725 2.2931 2.0418 31 1 3.9034 1.5463 4.4512 32 1 3.6684 3.2560 4.9472 33 1 2.0181 2.6931 6.5406 34 1 2.8572 1.1091 6.5279 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852156822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:59 Heat of formation + Delta-G solvation = -112.301809 kcal Electronic energy + Delta-G solvation = -16149.369803 eV Core-core repulsion = 13467.097729 eV Total energy + Delta-G solvation = -2682.272073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.94710 -38.95140 -38.01376 -34.77376 -33.85914 -32.56687 -29.84540 -27.88701 -25.34298 -24.54190 -23.10496 -21.69046 -21.10446 -18.47019 -18.24871 -17.88980 -16.92183 -16.60166 -16.36234 -15.44915 -15.24552 -14.65115 -14.63488 -14.35902 -14.02505 -13.68801 -13.27323 -13.08856 -12.97100 -12.75844 -12.48249 -12.37698 -12.30532 -11.90122 -11.67202 -11.48203 -11.32217 -11.21320 -10.94578 -10.42368 -8.98241 -8.05025 -6.13514 0.99966 1.45790 1.46432 1.53935 2.27554 2.46800 3.00947 3.23882 3.36243 3.54303 3.96205 4.04059 4.26972 4.39767 4.50193 4.54293 4.63746 4.72070 4.79180 4.81454 4.99678 5.06899 5.11888 5.33739 5.39031 5.64100 5.71676 5.81582 5.91664 6.30794 6.41693 6.65610 6.80460 6.97607 7.54156 9.00378 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.006172 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.669519 B = 4535.704398 C = 4737.658522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.687 5.687 14 C 0.048 3.952 15 C 0.086 3.914 16 H 0.128 0.872 17 C -0.137 4.137 18 C -0.169 4.169 19 C 0.471 3.529 20 O -0.512 6.512 21 O -0.371 6.371 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.015 0.985 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 4.467 14.381 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.318 5.318 14 C -0.082 4.082 15 C 0.032 3.968 16 H 0.145 0.855 17 C -0.174 4.174 18 C -0.207 4.207 19 C 0.315 3.685 20 O -0.400 6.400 21 O -0.288 6.288 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.061 4.574 14.127 15.161 hybrid contribution -0.536 -0.911 -0.939 1.414 sum 2.524 3.663 13.188 13.918 Atomic orbital electron populations 1.21484 0.96337 0.99528 1.00584 1.21963 0.96191 1.00554 0.99145 1.18969 0.93865 0.88984 0.86973 0.97701 1.21264 1.30568 1.11440 0.90763 0.92820 1.25608 0.95854 0.95861 1.01164 1.69997 1.39656 1.24947 1.21597 0.85693 0.78859 0.78861 0.78686 1.19788 1.21307 1.19952 1.60808 1.05075 1.62394 1.03488 1.22442 0.97431 0.97616 0.90674 1.23902 0.81688 0.97695 0.93538 0.85469 1.23072 0.96905 1.06400 0.91056 1.23119 0.93519 1.04237 0.99812 1.24176 0.85104 0.78575 0.80630 1.90665 1.53824 1.27580 1.67936 1.86811 1.40261 1.63613 1.38109 0.93967 0.93221 0.94173 0.91672 0.96338 0.93172 0.84937 0.96713 0.88567 0.88721 0.84452 0.83892 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 9.40 71.98 0.68 -4.77 16 2 C -0.14 -6.73 5.52 30.60 0.17 -6.56 16 3 C 0.22 10.95 2.33 44.17 0.10 11.05 16 4 H 0.01 0.27 7.83 -2.39 -0.02 0.26 16 5 C -0.50 -27.22 7.28 25.60 0.19 -27.03 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -52.55 11.37 21.45 0.24 -52.31 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.69 -28.35 6.26 -495.44 -3.10 -31.45 16 14 C 0.05 1.53 5.03 86.30 0.43 1.97 16 15 C 0.09 2.01 3.88 31.02 0.12 2.13 16 16 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.14 -1.82 6.69 31.61 0.21 -1.61 16 18 C -0.17 -2.40 6.97 30.74 0.21 -2.19 16 19 C 0.47 13.01 8.62 71.54 0.62 13.63 16 20 O -0.51 -18.38 18.00 21.60 0.39 -17.99 16 21 O -0.37 -11.18 10.20 -49.64 -0.51 -11.69 16 22 H 0.04 1.75 6.62 -2.38 -0.02 1.73 16 23 H 0.05 2.40 6.88 -2.39 -0.02 2.38 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 3.54 6.20 -2.39 -0.01 3.53 16 26 H 0.02 0.83 7.41 -2.39 -0.02 0.81 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.33 13.96 6.15 -89.69 -0.55 13.41 16 29 H 0.01 0.50 7.39 -2.39 -0.02 0.49 16 30 H 0.10 2.85 8.12 -2.39 -0.02 2.83 16 31 H 0.09 1.24 7.79 -2.39 -0.02 1.23 16 32 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.35 278.94 2.77 -64.58 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.54 Total: 15.40 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 3.18 Total: -12.21 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.86 Total: -83.76 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.12 Total: -29.68 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.35 2.77 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.722 kcal (2) G-P(sol) polarization free energy of solvation -67.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds