Wall clock time and date at job start Thu Apr 9 2020 11:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 H 1.09003 * 109.46671 * 304.26953 * 3 2 1 5 5 C 1.50697 * 109.47581 * 184.26637 * 3 2 1 6 6 H 1.07998 * 119.99813 * 245.41150 * 5 3 2 7 7 C 1.37874 * 119.99940 * 65.40715 * 5 3 2 8 8 N 1.31511 * 120.00233 * 193.87238 * 7 5 3 9 9 Si 1.86806 * 120.00106 * 13.87834 * 7 5 3 10 10 H 1.48495 * 109.47228 * 84.18640 * 9 7 5 11 11 H 1.48497 * 109.47318 * 204.19149 * 9 7 5 12 12 H 1.48506 * 109.46797 * 324.19205 * 9 7 5 13 13 N 1.46904 * 109.46884 * 64.26420 * 3 2 1 14 14 C 1.46897 * 110.99997 * 262.13250 * 13 3 2 15 15 C 1.53000 * 109.47224 * 175.30574 * 14 13 3 16 16 H 1.09001 * 110.18995 * 59.29995 * 15 14 13 17 17 C 1.54481 * 110.29492 * 181.21344 * 15 14 13 18 18 C 1.54674 * 101.63126 * 144.38359 * 17 15 14 19 19 C 1.51327 * 103.93746 * 335.49477 * 18 17 15 20 20 O 1.20833 * 124.95126 * 196.03718 * 19 18 17 21 21 O 1.33831 * 110.10154 * 16.05370 * 19 18 17 22 22 H 1.08997 * 109.47120 * 297.39676 * 1 2 3 23 23 H 1.09004 * 109.46650 * 57.40037 * 1 2 3 24 24 H 1.09000 * 109.46769 * 177.39878 * 1 2 3 25 25 H 1.08998 * 109.47510 * 239.99726 * 2 1 3 26 26 H 1.09004 * 109.47136 * 120.00102 * 2 1 3 27 27 H 0.97005 * 120.00079 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99949 * 26.09002 * 13 3 2 29 29 H 1.09000 * 109.47255 * 55.30974 * 14 13 3 30 30 H 1.08997 * 109.47670 * 295.30748 * 14 13 3 31 31 H 1.09008 * 110.99749 * 262.46915 * 17 15 14 32 32 H 1.08999 * 110.99314 * 26.29491 * 17 15 14 33 33 H 1.08994 * 110.53966 * 216.87638 * 18 17 15 34 34 H 1.09005 * 110.65434 * 94.16462 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6156 1.9779 -0.8493 5 6 3.5434 1.4438 -0.1057 6 1 4.1420 1.8122 0.7142 7 6 4.1544 0.9745 -1.2491 8 7 5.4443 0.7181 -1.2474 9 14 3.1502 0.7032 -2.8007 10 1 3.0285 1.9842 -3.5419 11 1 3.8266 -0.3027 -3.6585 12 1 1.7972 0.2124 -2.4351 13 7 1.6363 2.1046 1.2477 14 6 0.4225 2.9076 1.0485 15 6 -0.0326 3.4854 2.3901 16 1 0.7534 4.1080 2.8177 17 6 -1.3264 4.3094 2.2074 18 6 -2.0787 4.0047 3.5241 19 6 -1.5149 2.6717 3.9659 20 8 -2.0172 1.9474 4.7924 21 8 -0.3787 2.4121 3.3081 22 1 -0.3633 0.4729 0.9124 23 1 -0.3633 0.5537 -0.8658 24 1 -0.3633 -1.0266 -0.0466 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 5.8741 0.3876 -2.0518 28 1 1.5074 1.4320 1.9886 29 1 -0.3666 2.2778 0.6378 30 1 0.6351 3.7218 0.3557 31 1 -1.1034 5.3730 2.1222 32 1 -1.8930 3.9604 1.3441 33 1 -3.1505 3.9253 3.3426 34 1 -1.8743 4.7726 4.2703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852156823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:00 Heat of formation + Delta-G solvation = -109.914099 kcal Electronic energy + Delta-G solvation = -16190.504710 eV Core-core repulsion = 13508.336176 eV Total energy + Delta-G solvation = -2682.168534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.94552 -39.02074 -38.08607 -34.68730 -34.01777 -32.87950 -30.31939 -28.40548 -25.04310 -23.82351 -23.16125 -21.68239 -21.59423 -18.87675 -18.46397 -17.86758 -16.93217 -16.68781 -16.35435 -15.72990 -15.09373 -14.89898 -14.72170 -14.56334 -13.97780 -13.69493 -13.32042 -13.20608 -13.11622 -12.78245 -12.58834 -12.39895 -12.25346 -12.06291 -11.70136 -11.47646 -11.26474 -11.24076 -11.11420 -10.52140 -8.95857 -8.24363 -6.22619 1.13789 1.37419 1.38842 1.48024 2.17457 2.38791 2.99677 3.08431 3.34877 3.48699 3.95657 4.04191 4.21690 4.30417 4.33156 4.44215 4.46803 4.67155 4.77009 4.79679 4.86757 5.00844 5.04818 5.09423 5.16897 5.24420 5.50349 5.74281 5.92438 6.07042 6.45736 6.73099 6.75019 6.83519 7.40927 8.93166 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.044048 B = 0.006495 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.519515 B = 4309.901575 C = 4377.935203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C 0.200 3.800 4 H 0.032 0.968 5 C -0.507 4.507 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.950 5.950 9 Si 0.928 3.072 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.222 1.222 13 N -0.686 5.686 14 C 0.048 3.952 15 C 0.081 3.919 16 H 0.112 0.888 17 C -0.136 4.136 18 C -0.171 4.171 19 C 0.472 3.528 20 O -0.518 6.518 21 O -0.365 6.365 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 8.766 3.194 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.090 3.910 4 H 0.050 0.950 5 C -0.545 4.545 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.752 3.248 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.145 1.145 13 N -0.317 5.317 14 C -0.081 4.081 15 C 0.026 3.974 16 H 0.129 0.871 17 C -0.173 4.173 18 C -0.209 4.209 19 C 0.316 3.684 20 O -0.407 6.407 21 O -0.282 6.282 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.377 8.737 3.388 19.743 hybrid contribution -0.046 -1.141 -0.665 1.322 sum -17.423 7.596 2.723 19.201 Atomic orbital electron populations 1.21880 0.95194 1.01808 1.01415 1.22567 0.95735 1.00080 1.01020 1.19311 0.93221 0.89590 0.88866 0.95004 1.21298 0.91743 1.40142 1.01364 0.95234 1.25820 0.95792 0.94647 1.02381 1.70123 1.12641 1.46714 1.29552 0.86219 0.81264 0.78284 0.79027 1.19653 1.21977 1.14548 1.60518 1.33346 1.29600 1.08212 1.22534 0.91659 0.98638 0.95249 1.24013 0.99309 0.85754 0.88309 0.87056 1.23136 0.93048 1.03503 0.97631 1.23012 1.04134 0.93965 0.99759 1.23971 0.78576 0.88277 0.77573 1.90676 1.61340 1.56410 1.32304 1.86768 1.40984 1.47782 1.52631 0.92586 0.92410 0.92334 0.93019 0.93726 0.92797 0.84882 0.93676 0.88255 0.84813 0.88087 0.85192 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 8.66 71.98 0.62 -4.04 16 2 C -0.15 -6.37 4.62 30.59 0.14 -6.23 16 3 C 0.20 8.90 1.79 44.17 0.08 8.98 16 4 H 0.03 1.38 6.42 -2.39 -0.02 1.37 16 5 C -0.51 -28.94 9.28 25.60 0.24 -28.70 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.60 5.36 84.65 0.45 1.05 16 8 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.93 42.54 25.87 68.60 1.77 44.31 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.22 -9.03 5.35 99.48 0.53 -8.50 16 13 N -0.69 -26.47 6.09 -495.46 -3.02 -29.49 16 14 C 0.05 1.32 4.69 86.30 0.41 1.72 16 15 C 0.08 1.71 3.87 31.10 0.12 1.83 16 16 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.14 -1.50 6.70 31.67 0.21 -1.29 16 18 C -0.17 -2.14 6.88 30.62 0.21 -1.93 16 19 C 0.47 12.02 8.65 71.44 0.62 12.64 16 20 O -0.52 -17.56 18.00 21.64 0.39 -17.17 16 21 O -0.37 -10.28 10.03 -47.96 -0.48 -10.76 16 22 H 0.06 1.72 6.19 -2.39 -0.01 1.70 16 23 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 2.24 4.73 -2.39 -0.01 2.23 16 26 H 0.04 1.92 8.04 -2.38 -0.02 1.90 16 27 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 28 H 0.33 13.16 7.53 -89.69 -0.67 12.49 16 29 H 0.05 1.18 5.55 -2.39 -0.01 1.16 16 30 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.10 0.97 7.92 -2.39 -0.02 0.95 16 33 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -74.02 273.72 2.31 -71.71 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.25 Total: 16.87 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 3.10 Total: -15.96 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -2.72 Total: -89.00 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.09 Total: -27.92 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.77 Total: 44.31 kcal Total: -74.02 2.31 -71.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.207 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds