Wall clock time and date at job start Thu Apr 9 2020 11:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46225 * 124.85099 * 2 1 4 4 N 1.46802 * 108.05292 * 179.83406 * 3 2 1 5 5 C 1.34777 * 127.02974 * 180.15608 * 4 3 2 6 6 O 1.21585 * 119.99728 * 0.28468 * 5 4 3 7 7 N 1.34776 * 119.99692 * 180.28041 * 5 4 3 8 8 C 1.46503 * 119.99761 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47122 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00152 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00351 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99914 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47480 * 89.99382 * 13 11 9 15 15 H 1.48504 * 109.47221 * 209.99700 * 13 11 9 16 16 H 1.48501 * 109.47053 * 329.99260 * 13 11 9 17 17 C 1.46986 * 105.93665 * 0.41142 * 4 3 2 18 18 C 1.34295 * 124.85537 * 180.30456 * 2 1 3 19 19 O 1.21286 * 125.42308 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.47060 * 179.72464 * 1 2 3 21 21 H 1.09004 * 109.47073 * 299.71953 * 1 2 3 22 22 H 1.09000 * 109.47212 * 59.72036 * 1 2 3 23 23 H 1.08999 * 109.75247 * 299.65804 * 3 2 1 24 24 H 1.09003 * 109.75451 * 60.34893 * 3 2 1 25 25 H 0.96993 * 120.00089 * 0.02562 * 7 5 4 26 26 H 1.09003 * 109.47082 * 300.00616 * 8 7 5 27 27 H 1.09003 * 109.47081 * 60.00545 * 8 7 5 28 28 H 0.96999 * 120.00509 * 180.02562 * 12 11 9 29 29 H 1.08999 * 110.03981 * 240.46339 * 17 4 3 30 30 H 1.09004 * 110.07648 * 119.04301 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3007 1.2000 0.0000 4 7 3.7060 0.7757 0.0040 5 6 4.7940 1.5712 0.0082 6 8 4.6632 2.7800 0.0142 7 7 6.0269 1.0267 0.0059 8 6 7.2095 1.8913 0.0110 9 6 8.4535 1.0409 0.0065 10 1 8.3715 -0.0359 -0.0001 11 6 9.6965 1.6376 0.0095 12 7 10.7823 0.8954 0.0061 13 14 9.8384 3.5001 0.0201 14 1 9.8763 3.9858 1.4230 15 1 11.0849 3.9056 -0.6779 16 1 8.6670 4.0898 -0.6764 17 6 3.6840 -0.6939 -0.0037 18 6 2.2326 -1.1020 -0.0059 19 8 1.8233 -2.2437 -0.0115 20 1 -0.3633 -1.0277 -0.0049 21 1 -0.3633 0.5095 0.8925 22 1 -0.3634 0.5182 -0.8875 23 1 2.0946 1.7924 -0.8915 24 1 2.0947 1.7923 0.8915 25 1 6.1311 0.0624 0.0008 26 1 7.1999 2.5254 -0.8756 27 1 7.1992 2.5158 0.9044 28 1 11.6567 1.3152 0.0086 29 1 4.1791 -1.0796 0.8874 30 1 4.1793 -1.0709 -0.8986 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888907387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:06 Heat of formation + Delta-G solvation = -62.877003 kcal Electronic energy + Delta-G solvation = -15485.107850 eV Core-core repulsion = 12701.438654 eV Total energy + Delta-G solvation = -2783.669196 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.09181 -40.41475 -37.88126 -36.19919 -35.24959 -34.27757 -30.46057 -29.71403 -28.28215 -25.69096 -23.90776 -21.58485 -21.28212 -19.93922 -18.45947 -18.04737 -17.23615 -17.05892 -16.83495 -16.32173 -16.17696 -15.26122 -14.99104 -14.88291 -14.71018 -14.37080 -13.85681 -13.84076 -13.41080 -13.22221 -13.00829 -12.67300 -11.89645 -11.69404 -11.59263 -11.20410 -10.89042 -10.49476 -10.04192 -9.53019 -8.36497 -6.44007 1.15215 1.23165 1.37993 1.40723 1.52485 1.86797 2.01903 2.32054 2.94345 2.99480 3.06956 3.87887 4.18364 4.27818 4.30908 4.43000 4.62480 4.63896 4.80637 4.86368 5.07401 5.11451 5.27561 5.46089 5.77788 5.87601 6.16895 6.57767 6.80344 6.94947 7.19490 7.47596 8.78185 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.054708 B = 0.005693 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.682648 B = 4916.924723 C = 5397.500040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.623 5.623 3 C 0.354 3.646 4 N -0.646 5.646 5 C 0.733 3.267 6 O -0.623 6.623 7 N -0.714 5.714 8 C 0.250 3.750 9 C -0.547 4.547 10 H 0.058 0.942 11 C 0.027 3.973 12 N -0.933 5.933 13 Si 0.938 3.062 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.256 1.256 17 C 0.067 3.933 18 C 0.523 3.477 19 O -0.551 6.551 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.405 0.595 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.272 0.728 29 H 0.119 0.881 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.039 0.014 -0.020 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.358 5.358 3 C 0.146 3.854 4 N -0.388 5.388 5 C 0.435 3.565 6 O -0.503 6.503 7 N -0.367 5.367 8 C 0.126 3.874 9 C -0.585 4.585 10 H 0.077 0.923 11 C -0.173 4.173 12 N -0.571 5.571 13 Si 0.762 3.238 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.180 1.180 17 C -0.059 4.059 18 C 0.310 3.690 19 O -0.429 6.429 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.241 0.759 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.152 0.383 -0.015 19.156 hybrid contribution 0.631 0.077 0.010 0.636 sum -18.521 0.460 -0.005 18.527 Atomic orbital electron populations 1.21852 0.73936 1.04418 1.04276 1.48422 1.08465 1.06309 1.72560 1.21166 0.75005 0.85250 1.03992 1.47015 1.05356 1.06489 1.79967 1.15145 0.79658 0.83796 0.77901 1.90887 1.85616 1.13374 1.60467 1.45135 1.03481 1.10982 1.77143 1.19056 0.81796 0.90349 0.96150 1.21260 0.90029 0.94457 1.52729 0.92350 1.25584 0.95059 1.03151 0.93533 1.69983 0.98630 1.37820 1.50694 0.85844 0.78506 0.79980 0.79488 1.18963 1.20134 1.17964 1.22010 0.96089 0.80998 1.06832 1.20492 0.88716 0.84759 0.75027 1.90769 1.79000 1.20892 1.52262 0.90058 0.89370 0.89367 0.89140 0.89163 0.75943 0.96475 0.96582 0.91869 0.86298 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 11.18 127.77 1.43 2.53 16 2 N -0.62 -11.58 3.33 -859.40 -2.86 -14.44 16 3 C 0.35 7.20 7.57 170.95 1.29 8.49 16 4 N -0.65 -17.23 3.36 -854.30 -2.87 -20.10 16 5 C 0.73 26.56 8.53 179.05 1.53 28.09 16 6 O -0.62 -26.88 16.74 -3.98 -0.07 -26.94 16 7 N -0.71 -27.67 5.52 -482.30 -2.66 -30.33 16 8 C 0.25 11.81 4.50 85.63 0.38 12.20 16 9 C -0.55 -29.38 9.83 25.60 0.25 -29.13 16 10 H 0.06 3.31 7.84 -2.91 -0.02 3.29 16 11 C 0.03 1.49 5.47 84.65 0.46 1.96 16 12 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 13 Si 0.94 42.79 27.47 68.60 1.88 44.67 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.26 -11.40 6.54 99.48 0.65 -10.75 16 17 C 0.07 1.49 6.36 85.56 0.54 2.03 16 18 C 0.52 12.35 8.13 87.75 0.71 13.07 16 19 O -0.55 -16.47 17.43 -3.05 -0.05 -16.53 16 20 H 0.08 1.10 7.60 -2.39 -0.02 1.08 16 21 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 22 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.41 13.89 7.40 -92.71 -0.69 13.21 16 26 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 27 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -70.04 264.90 0.69 -69.35 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.42 Total: 9.70 kcal Atomic # 6 Polarization: 32.63 SS G_CDS: 6.61 Total: 39.24 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -8.09 Total: -119.49 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.12 Total: -43.47 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -70.04 0.69 -69.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds