Wall clock time and date at job start Thu Apr 9 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33258 * 119.99935 * 2 1 4 4 F 1.35101 * 120.00081 * 352.48270 * 3 2 1 5 5 C 1.47145 * 120.00424 * 172.48957 * 3 2 1 6 6 O 1.21652 * 119.99555 * 355.30762 * 5 3 2 7 7 N 1.34769 * 120.00184 * 175.03267 * 5 3 2 8 8 C 1.46497 * 120.00149 * 5.22034 * 7 5 3 9 9 C 1.36815 * 119.99758 * 185.22495 * 7 5 3 10 10 H 1.07995 * 119.99924 * 326.99364 * 9 7 5 11 11 C 1.39078 * 120.00119 * 146.99916 * 9 7 5 12 12 N 1.31342 * 120.00211 * 165.95381 * 11 9 7 13 13 Si 1.86800 * 119.99727 * 345.95112 * 11 9 7 14 14 H 1.48505 * 109.47060 * 88.64057 * 13 11 9 15 15 H 1.48503 * 109.47081 * 208.63839 * 13 11 9 16 16 H 1.48504 * 109.47486 * 328.63904 * 13 11 9 17 17 C 1.50697 * 120.00365 * 179.97438 * 2 1 3 18 18 C 1.53001 * 117.49468 * 358.25707 * 17 2 1 19 19 C 1.52999 * 59.99988 * 252.50531 * 18 17 2 20 20 H 1.09004 * 109.47073 * 90.00098 * 1 2 3 21 21 H 1.08994 * 109.47414 * 210.00206 * 1 2 3 22 22 H 1.09004 * 109.47496 * 330.00441 * 1 2 3 23 23 H 1.09000 * 109.46797 * 54.45934 * 8 7 5 24 24 H 1.09010 * 109.47227 * 174.45847 * 8 7 5 25 25 H 1.08997 * 109.47717 * 294.46023 * 8 7 5 26 26 H 0.96999 * 120.00468 * 180.02562 * 12 11 9 27 27 H 1.08999 * 115.55232 * 143.96312 * 17 2 1 28 28 H 1.08998 * 117.50422 * 359.97438 * 18 17 2 29 29 H 1.09007 * 117.49935 * 145.01850 * 18 17 2 30 30 H 1.08999 * 117.50404 * 252.50977 * 19 18 17 31 31 H 1.09004 * 117.49332 * 107.49052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1732 1.1541 0.0000 4 9 1.5064 2.3190 -0.1531 5 6 3.6352 1.1596 0.1666 6 8 4.2259 0.1198 0.3895 7 7 4.3204 2.3158 0.0666 8 6 3.6012 3.5820 -0.0935 9 6 5.6877 2.3070 0.1147 10 1 6.2019 1.5777 0.7230 11 6 6.4154 3.2373 -0.6197 12 7 7.6926 3.4163 -0.3712 13 14 5.5762 4.2321 -1.9597 14 1 5.0042 5.4703 -1.3723 15 1 6.5687 4.5923 -3.0039 16 1 4.4885 3.4246 -2.5682 17 6 2.2605 -1.3050 0.0006 18 6 1.4389 -2.5951 0.0424 19 6 2.2189 -2.1443 1.2791 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 2.8742 3.6912 0.7112 24 1 4.3100 4.4095 -0.0576 25 1 3.0845 3.5877 -1.0532 26 1 8.2000 4.0653 -0.8831 27 1 3.1842 -1.3148 -0.5779 28 1 0.3535 -2.4999 0.0700 29 1 1.8221 -3.4539 -0.5088 30 1 3.1151 -2.7065 1.5416 31 1 1.6464 -1.7526 2.1199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900451540.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:09 Heat of formation + Delta-G solvation = -18.673946 kcal Electronic energy + Delta-G solvation = -16155.289276 eV Core-core repulsion = 13353.616907 eV Total energy + Delta-G solvation = -2801.672369 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.50059 -38.88641 -37.41666 -34.90251 -32.46114 -32.09678 -27.92473 -26.57827 -25.18749 -22.52596 -22.02140 -20.32060 -18.06781 -17.17995 -16.53747 -16.25483 -15.69653 -15.49263 -14.45946 -13.95589 -13.82991 -13.67614 -12.96059 -12.92019 -12.52636 -12.44705 -12.21695 -12.13680 -11.45153 -11.26612 -10.99948 -10.62111 -10.42682 -10.28237 -10.16887 -9.92100 -9.23125 -8.47276 -8.25737 -7.81557 -6.46458 -4.01857 1.65734 3.01620 3.18935 3.20765 3.93297 4.06744 4.20968 4.26656 4.71785 4.92508 5.10618 5.19834 5.30841 5.42020 5.46225 5.66444 5.79126 5.83359 5.88777 6.00927 6.08495 6.15791 6.31998 6.38536 6.41706 6.68806 6.91130 7.47179 8.15070 8.41326 8.82495 9.20829 9.61809 10.64608 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.038626 B = 0.008952 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.726674 B = 3126.869265 C = 3597.610341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C 0.016 3.984 4 F -0.144 7.144 5 C 0.479 3.521 6 O -0.543 6.543 7 N -0.452 5.452 8 C 0.048 3.952 9 C -0.312 4.312 10 H 0.114 0.886 11 C 0.055 3.945 12 N -0.862 5.862 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.264 1.264 17 C -0.086 4.086 18 C -0.195 4.195 19 C -0.157 4.157 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.277 0.723 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 -3.876 -0.553 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.007 4.007 4 F -0.123 7.123 5 C 0.268 3.732 6 O -0.426 6.426 7 N -0.171 5.171 8 C -0.096 4.096 9 C -0.440 4.440 10 H 0.131 0.869 11 C -0.151 4.151 12 N -0.498 5.498 13 Si 0.717 3.283 14 H -0.200 1.200 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.104 4.104 18 C -0.231 4.231 19 C -0.194 4.194 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.751 -4.197 -0.484 13.432 hybrid contribution -0.450 1.071 -0.750 1.383 sum -13.201 -3.126 -1.234 13.622 Atomic orbital electron populations 1.20768 0.91120 1.02774 1.02479 1.21561 0.95322 0.92820 1.00089 1.20021 0.91403 0.80998 1.08237 1.91391 1.80721 1.47072 1.93092 1.17888 0.85118 0.84670 0.85520 1.90660 1.68513 1.30574 1.52879 1.43632 1.06902 1.03791 1.62785 1.22390 0.97602 0.88477 1.01090 1.19228 0.78245 1.18924 1.27568 0.86856 1.25405 0.95368 0.97265 0.97092 1.69645 1.07654 1.33541 1.39000 0.86900 0.79288 0.80144 0.81931 1.19984 1.21484 1.18858 1.20988 0.99920 0.86712 1.02781 1.23138 0.98411 0.98632 1.02966 1.22773 1.02040 1.03027 0.91528 0.90963 0.90972 0.91475 0.91777 0.90373 0.92731 0.91286 0.84833 0.89020 0.88904 0.88610 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.32 36.00 0.34 -1.13 16 2 C -0.09 -1.60 5.81 -101.09 -0.59 -2.19 16 3 C 0.02 0.32 7.16 -37.71 -0.27 0.05 16 4 F -0.14 -2.66 12.70 2.25 0.03 -2.63 16 5 C 0.48 11.62 7.49 -12.65 -0.09 11.52 16 6 O -0.54 -14.21 13.17 5.23 0.07 -14.14 16 7 N -0.45 -11.44 2.71 -123.53 -0.33 -11.78 16 8 C 0.05 1.02 6.66 59.85 0.40 1.42 16 9 C -0.31 -8.94 9.56 -15.02 -0.14 -9.08 16 10 H 0.11 3.60 7.77 -52.49 -0.41 3.19 16 11 C 0.05 1.52 5.30 -17.45 -0.09 1.43 16 12 N -0.86 -24.88 13.95 55.50 0.77 -24.11 16 13 Si 0.89 20.76 24.26 -169.99 -4.12 16.64 16 14 H -0.27 -5.91 6.55 56.52 0.37 -5.54 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.26 -6.14 6.59 56.52 0.37 -5.77 16 17 C -0.09 -1.46 4.21 -91.77 -0.39 -1.85 16 18 C -0.19 -2.52 9.81 -26.73 -0.26 -2.78 16 19 C -0.16 -2.34 10.23 -26.73 -0.27 -2.61 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.07 0.79 6.22 -51.93 -0.32 0.46 16 22 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 23 H 0.06 1.21 7.05 -51.93 -0.37 0.85 16 24 H 0.08 1.70 4.54 -51.92 -0.24 1.46 16 25 H 0.05 1.11 6.18 -51.93 -0.32 0.79 16 26 H 0.28 7.35 8.31 -40.82 -0.34 7.02 16 27 H 0.13 2.66 6.46 -51.93 -0.34 2.32 16 28 H 0.09 1.02 6.22 -51.93 -0.32 0.70 16 29 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -30.14 255.59 -4.71 -34.85 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.60 Total: 2.54 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.38 Total: -5.22 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.44 Total: -35.88 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.03 Total: -2.63 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.12 Total: 16.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.14 -4.71 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900451540.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.175 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds