Wall clock time and date at job start Thu Apr 9 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.52990 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47737 * 55.00033 * 4 3 2 6 6 O 1.42904 * 109.47364 * 294.99470 * 4 3 2 7 7 C 1.50707 * 109.47156 * 174.99900 * 4 3 2 8 8 O 1.21289 * 120.00223 * 115.00012 * 7 4 3 9 9 N 1.34778 * 119.99618 * 295.00084 * 7 4 3 10 10 C 1.37094 * 119.99579 * 179.97438 * 9 7 4 11 11 H 1.08007 * 120.00164 * 224.06234 * 10 9 7 12 12 C 1.38953 * 120.00518 * 44.05906 * 10 9 7 13 13 N 1.31415 * 119.99443 * 18.18318 * 12 10 9 14 14 Si 1.86801 * 120.00273 * 198.17981 * 12 10 9 15 15 H 1.48504 * 109.46847 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47190 * 299.99796 * 14 12 10 17 17 H 1.48492 * 109.46872 * 60.00240 * 14 12 10 18 18 C 1.46495 * 120.00511 * 359.97438 * 9 7 4 19 19 C 1.52995 * 117.50269 * 191.82010 * 18 9 7 20 20 C 1.52997 * 117.50253 * 123.15691 * 18 9 7 21 21 H 1.08996 * 109.47365 * 300.00071 * 1 2 3 22 22 H 1.08999 * 109.47142 * 60.00414 * 1 2 3 23 23 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46947 * 239.99668 * 2 1 3 25 25 H 1.08997 * 109.46819 * 120.00021 * 2 1 3 26 26 H 1.08996 * 109.47017 * 59.99716 * 3 2 1 27 27 H 1.08999 * 109.46732 * 299.99837 * 3 2 1 28 28 H 0.96696 * 114.00100 * 300.00858 * 6 4 3 29 29 H 0.97004 * 119.99715 * 174.89203 * 13 12 10 30 30 H 1.09008 * 115.54881 * 337.48776 * 18 9 7 31 31 H 1.09004 * 117.49570 * 0.02562 * 19 18 9 32 32 H 1.09001 * 117.50151 * 145.01373 * 19 18 9 33 33 H 1.08999 * 117.50065 * 214.98185 * 20 18 9 34 34 H 1.09004 * 117.49511 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9338 0.8529 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 4.0724 2.8579 -0.1232 8 8 4.6927 3.3632 0.7884 9 7 3.8324 3.5622 -1.2470 10 6 4.2890 4.8500 -1.3595 11 1 3.6454 5.6179 -1.7627 12 6 5.5798 5.1674 -0.9547 13 7 6.4742 4.2161 -0.8056 14 14 6.0438 6.9461 -0.6225 15 1 7.4680 7.0170 -0.2078 16 1 5.8477 7.7477 -1.8570 17 1 5.1847 7.4876 0.4610 18 6 3.0837 2.9517 -2.3483 19 6 3.0791 3.6847 -3.6913 20 6 1.8178 3.6673 -2.8241 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.7601 1.3479 2.0146 29 1 7.3935 4.4434 -0.5954 30 1 3.0839 1.8619 -2.3697 31 1 3.6336 4.6209 -3.7555 32 1 3.0760 3.0771 -4.5962 33 1 0.9854 3.0483 -3.1589 34 1 1.5418 4.5921 -2.3174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:19 Heat of formation + Delta-G solvation = -60.085012 kcal Electronic energy + Delta-G solvation = -16735.080484 eV Core-core repulsion = 14055.072701 eV Total energy + Delta-G solvation = -2680.007783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09185 -36.75227 -35.64582 -33.75189 -32.71028 -31.02909 -28.84176 -25.30355 -23.51709 -21.75284 -21.28196 -20.76561 -19.48192 -17.09735 -16.10770 -15.72493 -15.19275 -14.69296 -14.31648 -13.92177 -13.67597 -13.13177 -13.09724 -12.65654 -12.09895 -11.64101 -11.58159 -11.31247 -10.99650 -10.90066 -10.83155 -10.73986 -10.59931 -10.46096 -10.17167 -9.92017 -9.88955 -9.65047 -8.66772 -7.88207 -7.01753 -6.10791 -3.87611 3.29745 3.37410 3.39863 4.03816 4.25157 4.71880 4.79700 4.98639 5.14153 5.22629 5.30699 5.37347 5.56669 5.62365 5.68829 5.75145 5.85536 5.97967 6.05885 6.11183 6.16742 6.21080 6.30471 6.45366 6.56193 6.59590 6.72335 6.94911 7.60906 8.14553 8.29472 9.04886 9.14297 9.64602 10.25797 10.97964 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029444 B = 0.009950 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.723353 B = 2813.290251 C = 3438.282030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.094 3.906 5 H 0.102 0.898 6 O -0.547 6.547 7 C 0.455 3.545 8 O -0.528 6.528 9 N -0.423 5.423 10 C -0.353 4.353 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.831 5.831 14 Si 0.914 3.086 15 H -0.286 1.286 16 H -0.278 1.278 17 H -0.274 1.274 18 C 0.073 3.927 19 C -0.177 4.177 20 C -0.206 4.206 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.374 0.626 29 H 0.265 0.735 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 -5.429 -2.307 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.189 4.189 4 C 0.031 3.969 5 H 0.120 0.880 6 O -0.352 6.352 7 C 0.242 3.758 8 O -0.405 6.405 9 N -0.145 5.145 10 C -0.480 4.480 11 H 0.095 0.905 12 C -0.138 4.138 13 N -0.464 5.464 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.204 1.204 17 H -0.200 1.200 18 C -0.033 4.033 19 C -0.215 4.215 20 C -0.245 4.245 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.810 -5.654 -2.088 10.674 hybrid contribution 0.074 1.237 0.277 1.270 sum -8.736 -4.417 -1.811 9.955 Atomic orbital electron populations 1.21776 0.96286 1.01044 1.01701 1.21473 0.95150 0.96802 1.02275 1.22386 0.95396 0.97239 1.03836 1.21808 0.92639 0.94247 0.88196 0.88021 1.86465 1.77971 1.55307 1.15421 1.20611 0.83961 0.87823 0.83384 1.90529 1.40439 1.70315 1.39265 1.42811 1.49118 1.12653 1.09874 1.18817 0.97095 0.83808 1.48291 0.90510 1.25268 0.95375 0.98100 0.95080 1.69827 1.02166 1.32943 1.41416 0.86257 0.77504 0.83444 0.78699 1.21158 1.20357 1.19977 1.21762 0.96447 0.94697 0.90408 1.23118 1.00785 1.04038 0.93570 1.23305 0.91872 1.03651 1.05681 0.92961 0.92826 0.93154 0.92247 0.91593 0.91740 0.89661 0.77811 0.92466 0.87775 0.87452 0.89863 0.89800 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.56 5.83 -26.73 -0.16 -1.72 16 3 C -0.15 -2.38 4.57 -26.74 -0.12 -2.51 16 4 C 0.09 1.87 2.57 -27.88 -0.07 1.80 16 5 H 0.10 1.98 7.32 -51.93 -0.38 1.60 16 6 O -0.55 -11.01 12.53 -55.09 -0.69 -11.70 16 7 C 0.46 11.61 6.38 -10.98 -0.07 11.54 16 8 O -0.53 -15.78 14.06 -14.31 -0.20 -15.98 16 9 N -0.42 -10.50 2.85 -107.73 -0.31 -10.81 16 10 C -0.35 -9.65 7.66 -14.93 -0.11 -9.76 16 11 H 0.08 2.02 7.62 -52.48 -0.40 1.62 16 12 C 0.07 2.07 4.39 -17.46 -0.08 1.99 16 13 N -0.83 -25.09 11.72 55.50 0.65 -24.44 16 14 Si 0.91 22.11 29.59 -169.99 -5.03 17.08 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.07 1.43 4.40 -67.94 -0.30 1.14 16 19 C -0.18 -3.18 9.84 -26.70 -0.26 -3.44 16 20 C -0.21 -3.43 9.61 -26.70 -0.26 -3.69 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.34 5.14 -51.93 -0.27 1.08 16 28 H 0.37 6.72 8.79 45.56 0.40 7.12 16 29 H 0.27 7.70 8.32 -40.82 -0.34 7.36 16 30 H 0.10 1.82 6.13 -51.92 -0.32 1.51 16 31 H 0.11 2.17 7.00 -51.93 -0.36 1.80 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 280.49 15.07 4.23 4.23 Total: -1.00 -33.05 280.49 -6.66 -39.71 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.25 Total: 7.85 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.06 Total: -5.94 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.34 Total: -35.25 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.89 Total: -27.68 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.05 -6.66 -39.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.376 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds