Wall clock time and date at job start Thu Apr 9 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.52990 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47737 * 55.00033 * 4 3 2 6 6 O 1.42904 * 109.47364 * 294.99470 * 4 3 2 7 7 C 1.50707 * 109.47156 * 174.99900 * 4 3 2 8 8 O 1.21289 * 120.00223 * 115.00012 * 7 4 3 9 9 N 1.34778 * 119.99618 * 295.00084 * 7 4 3 10 10 C 1.37094 * 119.99579 * 179.97438 * 9 7 4 11 11 H 1.08007 * 120.00164 * 224.06234 * 10 9 7 12 12 C 1.38953 * 120.00518 * 44.05906 * 10 9 7 13 13 N 1.31415 * 119.99443 * 18.18318 * 12 10 9 14 14 Si 1.86801 * 120.00273 * 198.17981 * 12 10 9 15 15 H 1.48504 * 109.46847 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47190 * 299.99796 * 14 12 10 17 17 H 1.48492 * 109.46872 * 60.00240 * 14 12 10 18 18 C 1.46495 * 120.00511 * 359.97438 * 9 7 4 19 19 C 1.52995 * 117.50269 * 191.82010 * 18 9 7 20 20 C 1.52997 * 117.50253 * 123.15691 * 18 9 7 21 21 H 1.08996 * 109.47365 * 300.00071 * 1 2 3 22 22 H 1.08999 * 109.47142 * 60.00414 * 1 2 3 23 23 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46947 * 239.99668 * 2 1 3 25 25 H 1.08997 * 109.46819 * 120.00021 * 2 1 3 26 26 H 1.08996 * 109.47017 * 59.99716 * 3 2 1 27 27 H 1.08999 * 109.46732 * 299.99837 * 3 2 1 28 28 H 0.96696 * 114.00100 * 300.00858 * 6 4 3 29 29 H 0.97004 * 119.99715 * 174.89203 * 13 12 10 30 30 H 1.09008 * 115.54881 * 337.48776 * 18 9 7 31 31 H 1.09004 * 117.49570 * 0.02562 * 19 18 9 32 32 H 1.09001 * 117.50151 * 145.01373 * 19 18 9 33 33 H 1.08999 * 117.50065 * 214.98185 * 20 18 9 34 34 H 1.09004 * 117.49511 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9338 0.8529 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 4.0724 2.8579 -0.1232 8 8 4.6927 3.3632 0.7884 9 7 3.8324 3.5622 -1.2470 10 6 4.2890 4.8500 -1.3595 11 1 3.6454 5.6179 -1.7627 12 6 5.5798 5.1674 -0.9547 13 7 6.4742 4.2161 -0.8056 14 14 6.0438 6.9461 -0.6225 15 1 7.4680 7.0170 -0.2078 16 1 5.8477 7.7477 -1.8570 17 1 5.1847 7.4876 0.4610 18 6 3.0837 2.9517 -2.3483 19 6 3.0791 3.6847 -3.6913 20 6 1.8178 3.6673 -2.8241 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.7601 1.3479 2.0146 29 1 7.3935 4.4434 -0.5954 30 1 3.0839 1.8619 -2.3697 31 1 3.6336 4.6209 -3.7555 32 1 3.0760 3.0771 -4.5962 33 1 0.9854 3.0483 -3.1589 34 1 1.5418 4.5921 -2.3174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:59:19 Heat of formation + Delta-G solvation = -82.983556 kcal Electronic energy + Delta-G solvation = -16736.073440 eV Core-core repulsion = 14055.072701 eV Total energy + Delta-G solvation = -2681.000738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85008 -38.32439 -37.36328 -34.99266 -34.70113 -32.92049 -30.28875 -27.10239 -25.06240 -23.13969 -22.82150 -22.00427 -21.33017 -18.89445 -17.92436 -17.27968 -16.83307 -16.52450 -15.76254 -15.55645 -15.22804 -14.76660 -14.48954 -14.09909 -13.74949 -13.29631 -12.82435 -12.80884 -12.75484 -12.66045 -12.44296 -12.21600 -12.11046 -11.90869 -11.74501 -11.44371 -11.34749 -11.13630 -10.67710 -9.79243 -8.96718 -8.22578 -6.01713 1.33918 1.42654 1.46383 2.18074 2.35474 3.01147 3.11458 3.32307 3.49273 3.89680 4.02891 4.07162 4.17792 4.25099 4.36194 4.44620 4.51206 4.76254 4.91272 4.93385 4.99152 5.04598 5.11326 5.28316 5.30861 5.41186 5.45949 5.50651 5.54945 6.16448 6.65566 7.00979 7.17321 7.66216 8.30271 8.85790 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029444 B = 0.009950 C = 0.008142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.723353 B = 2813.290251 C = 3438.282030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.137 4.137 4 C 0.105 3.895 5 H 0.108 0.892 6 O -0.557 6.557 7 C 0.437 3.563 8 O -0.587 6.587 9 N -0.436 5.436 10 C -0.359 4.359 11 H 0.080 0.920 12 C 0.018 3.982 13 N -0.873 5.873 14 Si 0.972 3.028 15 H -0.289 1.289 16 H -0.254 1.254 17 H -0.281 1.281 18 C 0.042 3.958 19 C -0.177 4.177 20 C -0.174 4.174 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.382 0.618 29 H 0.259 0.741 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 -6.141 -3.636 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.175 4.175 4 C 0.042 3.958 5 H 0.126 0.874 6 O -0.362 6.362 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.157 5.157 10 C -0.487 4.487 11 H 0.098 0.902 12 C -0.188 4.188 13 N -0.508 5.508 14 Si 0.796 3.204 15 H -0.215 1.215 16 H -0.178 1.178 17 H -0.206 1.206 18 C -0.062 4.062 19 C -0.215 4.215 20 C -0.213 4.213 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.231 0.769 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.080 -6.362 -3.468 13.239 hybrid contribution 0.690 1.442 0.654 1.727 sum -10.390 -4.920 -2.814 11.836 Atomic orbital electron populations 1.21747 0.94343 1.02279 1.02092 1.21435 0.96736 0.94428 1.02532 1.22282 0.91884 0.99462 1.03837 1.21783 0.95295 0.90422 0.88254 0.87426 1.86426 1.78574 1.55291 1.15943 1.21673 0.83081 0.89889 0.82792 1.90477 1.43050 1.72187 1.41221 1.43023 1.49057 1.12266 1.11312 1.19112 0.96891 0.85541 1.47125 0.90204 1.26120 0.95688 1.01833 0.95121 1.69953 1.02148 1.34873 1.43857 0.85350 0.76664 0.79282 0.79055 1.21455 1.17836 1.20644 1.22082 0.98298 0.96053 0.89799 1.23173 1.01229 1.02919 0.94148 1.23327 0.91911 1.02775 1.03275 0.93039 0.92015 0.91542 0.91293 0.92137 0.92284 0.89083 0.76950 0.93193 0.85406 0.90359 0.86455 0.85402 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -1.99 16 2 C -0.11 -2.63 5.83 30.60 0.18 -2.45 16 3 C -0.14 -4.05 4.57 30.59 0.14 -3.91 16 4 C 0.11 4.12 2.57 29.85 0.08 4.20 16 5 H 0.11 4.06 7.32 -2.39 -0.02 4.05 16 6 O -0.56 -22.38 12.53 -129.99 -1.63 -24.01 16 7 C 0.44 22.60 6.38 87.66 0.56 23.16 16 8 O -0.59 -36.37 14.06 15.93 0.22 -36.14 16 9 N -0.44 -21.67 2.85 -613.13 -1.75 -23.42 16 10 C -0.36 -19.86 7.66 84.04 0.64 -19.22 16 11 H 0.08 4.23 7.62 -2.91 -0.02 4.21 16 12 C 0.02 1.07 4.39 84.93 0.37 1.44 16 13 N -0.87 -54.56 11.72 21.66 0.25 -54.31 16 14 Si 0.97 46.32 29.59 68.60 2.03 48.35 16 15 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 16 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 18 C 0.04 1.58 4.40 44.99 0.20 1.78 16 19 C -0.18 -5.91 9.84 30.62 0.30 -5.61 16 20 C -0.17 -5.21 9.61 30.62 0.29 -4.92 16 21 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 2.59 5.14 -2.39 -0.01 2.58 16 28 H 0.38 13.92 8.79 -74.06 -0.65 13.27 16 29 H 0.26 15.67 8.32 -92.71 -0.77 14.90 16 30 H 0.13 4.10 6.13 -2.38 -0.01 4.08 16 31 H 0.08 3.10 7.00 -2.38 -0.02 3.08 16 32 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -74.04 280.49 3.05 -70.99 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.44 Total: 26.06 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.48 Total: -7.52 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.50 Total: -77.73 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -1.40 Total: -60.15 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.04 3.05 -70.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.992 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds