Wall clock time and date at job start Thu Apr 9 2020 11:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45198 * 109.46832 * 2 1 4 4 C 1.34231 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99613 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00349 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.58474 * 336.88414 * 6 4 3 8 8 C 1.53187 * 109.58595 * 97.30993 * 6 4 3 9 9 C 1.53041 * 109.31233 * 174.42596 * 8 6 4 10 10 C 1.53044 * 109.53638 * 298.63242 * 9 8 6 11 11 C 1.53195 * 109.31297 * 61.36790 * 10 9 8 12 12 N 1.46925 * 108.77086 * 305.36370 * 11 10 9 13 13 C 1.36936 * 120.63054 * 233.58580 * 12 11 10 14 14 H 1.08004 * 120.00137 * 215.37572 * 13 12 11 15 15 C 1.38816 * 120.00049 * 35.37474 * 13 12 11 16 16 N 1.31612 * 119.99456 * 14.82901 * 15 13 12 17 17 Si 1.86801 * 119.99929 * 194.82804 * 15 13 12 18 18 H 1.48501 * 109.46877 * 60.00295 * 17 15 13 19 19 H 1.48496 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47304 * 299.99915 * 17 15 13 21 21 H 1.09005 * 109.46414 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46766 * 299.99303 * 1 2 3 23 23 H 1.08998 * 109.47140 * 59.99927 * 1 2 3 24 24 H 1.09008 * 109.46930 * 240.00247 * 2 1 3 25 25 H 1.08998 * 109.47140 * 120.00073 * 2 1 3 26 26 H 1.08999 * 109.49683 * 294.37084 * 8 6 4 27 27 H 1.09004 * 109.50013 * 54.47253 * 8 6 4 28 28 H 1.09003 * 109.45974 * 178.61433 * 9 8 6 29 29 H 1.09000 * 109.46217 * 58.65394 * 9 8 6 30 30 H 1.09004 * 109.49845 * 301.41483 * 10 9 8 31 31 H 1.09003 * 109.52303 * 181.33224 * 10 9 8 32 32 H 1.08994 * 109.58803 * 185.57897 * 11 10 9 33 33 H 1.08993 * 109.70364 * 65.21811 * 11 10 9 34 34 H 0.97005 * 119.99783 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.1877 3.6363 -0.4021 8 6 4.2861 3.3414 1.4329 9 6 4.9966 4.6967 1.4107 10 6 6.2874 4.5847 0.5961 11 6 5.9446 4.1948 -0.8452 12 7 5.1362 2.9682 -0.8237 13 6 5.5082 1.8744 -1.5589 14 1 4.7552 1.2472 -2.0127 15 6 6.8533 1.5718 -1.7209 16 7 7.7536 2.1415 -0.9480 17 14 7.3854 0.3563 -3.0356 18 1 6.9668 0.8557 -4.3700 19 1 8.8625 0.2073 -3.0033 20 1 6.7499 -0.9609 -2.7783 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 3.3790 3.4160 2.0326 27 1 4.9479 2.5907 1.8651 28 1 5.2359 4.9980 2.4306 29 1 4.3437 5.4417 0.9559 30 1 6.9303 3.8223 1.0361 31 1 6.8051 5.5439 0.6002 32 1 6.8634 4.0172 -1.4040 33 1 5.3786 4.9972 -1.3182 34 1 8.6935 1.9298 -1.0609 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105979310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:42 Heat of formation + Delta-G solvation = -70.761464 kcal Electronic energy + Delta-G solvation = -16791.316624 eV Core-core repulsion = 14110.845876 eV Total energy + Delta-G solvation = -2680.470749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.77090 -37.31607 -35.55010 -32.95087 -31.53808 -30.57477 -29.75900 -25.52187 -23.83711 -22.32420 -22.03284 -20.20320 -18.91899 -17.17400 -16.58425 -15.96931 -15.22944 -14.65655 -14.01468 -13.72874 -13.43330 -13.17430 -12.83651 -12.68046 -12.32325 -12.05673 -11.80482 -11.35075 -11.23580 -11.04372 -10.73796 -10.50294 -10.40090 -10.22160 -10.07614 -9.94123 -9.67375 -9.37374 -9.12231 -8.30634 -6.52726 -5.72995 -3.23145 3.14296 3.34320 3.45574 3.48234 3.51379 4.55530 5.15458 5.20476 5.35560 5.42416 5.46796 5.55508 5.70383 5.74148 5.86547 5.96484 6.05458 6.12535 6.18397 6.24610 6.41325 6.58480 6.76082 6.80328 6.91910 6.97216 7.17567 7.52704 7.65201 7.87620 8.49092 8.77275 9.22774 9.80160 10.38402 11.33768 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.012184 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.515027 B = 2297.485390 C = 3410.917008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.374 6.374 4 C 0.451 3.549 5 O -0.463 6.463 6 C 0.181 3.819 7 H 0.057 0.943 8 C -0.124 4.124 9 C -0.107 4.107 10 C -0.131 4.131 11 C 0.170 3.830 12 N -0.577 5.577 13 C -0.236 4.236 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.894 5.894 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.282 1.282 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.004 0.996 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 1.755 3.217 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.293 6.293 4 C 0.291 3.709 5 O -0.345 6.345 6 C 0.074 3.926 7 H 0.074 0.926 8 C -0.163 4.163 9 C -0.145 4.145 10 C -0.170 4.170 11 C 0.046 3.954 12 N -0.303 5.303 13 C -0.365 4.365 14 H 0.078 0.922 15 C -0.186 4.186 16 N -0.538 5.538 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.208 1.208 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.022 0.978 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.315 1.375 3.210 9.948 hybrid contribution 0.414 -0.981 -0.475 1.166 sum -8.900 0.394 2.735 9.320 Atomic orbital electron populations 1.21769 0.93430 1.02259 1.03118 1.22808 0.94599 0.81852 1.02101 1.86527 1.26385 1.30994 1.85360 1.24014 0.79416 0.93661 0.73778 1.90685 1.59472 1.42612 1.41682 1.20364 0.91530 0.87759 0.92935 0.92551 1.21924 0.99714 0.98610 0.96092 1.21401 0.97957 0.95838 0.99259 1.21940 0.96092 1.00095 0.98862 1.20845 0.95797 0.84769 0.93994 1.44208 1.24730 1.12236 1.49158 1.18939 0.90811 1.04499 1.22299 0.92181 1.25137 0.96977 0.97989 0.98521 1.69962 1.00736 1.45378 1.37717 0.86371 0.77102 0.81610 0.81681 1.21022 1.21630 1.20831 0.90901 0.91830 0.91719 0.91738 0.91956 0.93028 0.91361 0.93286 0.92970 0.90491 0.93876 0.88761 0.97805 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.95 6.19 37.16 0.23 1.18 16 3 O -0.37 -7.13 10.22 -39.26 -0.40 -7.53 16 4 C 0.45 10.19 6.25 36.00 0.23 10.41 16 5 O -0.46 -12.09 14.01 -18.75 -0.26 -12.35 16 6 C 0.18 4.00 3.38 -68.75 -0.23 3.77 16 7 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 8 C -0.12 -2.43 5.35 -26.61 -0.14 -2.57 16 9 C -0.11 -1.92 5.88 -26.69 -0.16 -2.08 16 10 C -0.13 -2.73 6.08 -26.61 -0.16 -2.89 16 11 C 0.17 4.02 5.65 -3.71 -0.02 4.00 16 12 N -0.58 -14.77 2.95 -166.09 -0.49 -15.26 16 13 C -0.24 -6.70 7.25 -15.06 -0.11 -6.81 16 14 H 0.06 1.77 6.71 -52.48 -0.35 1.42 16 15 C 0.01 0.38 4.97 -17.43 -0.09 0.29 16 16 N -0.89 -25.94 11.24 55.49 0.62 -25.31 16 17 Si 0.90 22.72 29.58 -169.99 -5.03 17.69 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 25 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.85 8.05 -51.93 -0.42 1.43 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 2.48 5.87 -51.93 -0.30 2.18 16 33 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -31.23 277.24 -6.73 -37.97 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.28 Total: -3.38 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.07 Total: 4.00 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.13 Total: -40.57 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.66 Total: -19.88 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.23 -6.73 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105979310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.796 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds