Wall clock time and date at job start Thu Apr 9 2020 11:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00389 * 2 1 4 4 C 1.50705 * 109.46961 * 288.38507 * 3 2 1 5 5 H 1.07997 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99647 * 179.72366 * 4 3 2 7 7 N 1.31515 * 120.00103 * 0.27093 * 6 4 3 8 8 Si 1.86796 * 119.99833 * 180.27289 * 6 4 3 9 9 H 1.48500 * 109.47279 * 89.99570 * 8 6 4 10 10 H 1.48502 * 109.47465 * 209.99810 * 8 6 4 11 11 H 1.48497 * 109.47238 * 330.00029 * 8 6 4 12 12 C 1.46902 * 110.99734 * 123.95524 * 2 1 3 13 13 C 1.50704 * 110.01515 * 181.73390 * 12 2 1 14 14 O 1.20827 * 120.00041 * 143.86665 * 13 12 2 15 15 O 1.34226 * 119.99952 * 323.87043 * 13 12 2 16 16 C 1.54266 * 110.03344 * 60.34324 * 12 2 1 17 17 C 1.54956 * 104.15860 * 217.13604 * 16 12 2 18 18 C 1.54887 * 102.77930 * 37.88964 * 17 16 12 19 19 C 1.53870 * 110.03132 * 303.12415 * 12 2 1 20 20 H 1.09009 * 109.46876 * 64.66613 * 1 2 3 21 21 H 1.08995 * 109.47007 * 184.66693 * 1 2 3 22 22 H 1.09001 * 109.47333 * 304.67109 * 1 2 3 23 23 H 1.08993 * 109.47760 * 168.38209 * 3 2 1 24 24 H 1.09005 * 109.46783 * 48.38080 * 3 2 1 25 25 H 0.96992 * 119.99913 * 180.02562 * 7 6 4 26 26 H 0.96700 * 117.00159 * 179.97438 * 15 13 12 27 27 H 1.08992 * 110.48403 * 335.78461 * 16 12 2 28 28 H 1.09001 * 110.48258 * 98.42786 * 16 12 2 29 29 H 1.09004 * 110.72190 * 279.57252 * 17 16 12 30 30 H 1.08996 * 110.92222 * 156.29809 * 17 16 12 31 31 H 1.09007 * 110.48411 * 203.41024 * 18 17 16 32 32 H 1.08991 * 110.48962 * 80.76071 * 18 17 16 33 33 H 1.09005 * 110.03236 * 238.57175 * 19 12 2 34 34 H 1.09003 * 110.03550 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7572 2.0010 -1.3484 5 1 1.2643 1.4384 -2.1275 6 6 2.1638 3.2969 -1.5856 7 7 2.7644 3.9818 -0.6370 8 14 1.8616 4.0799 -3.2544 9 1 0.5406 4.7582 -3.2510 10 1 2.9280 5.0745 -3.5350 11 1 1.8758 3.0294 -4.3039 12 6 1.9954 -0.7660 1.1376 13 6 3.5016 -0.7162 1.1403 14 8 4.1026 -0.6676 2.1874 15 8 4.1755 -0.7257 -0.0205 16 6 1.5152 -2.2298 1.0565 17 6 1.2541 -2.6254 2.5318 18 6 0.6512 -1.3310 3.1320 19 6 1.4467 -0.1947 2.4568 20 1 -0.3633 0.4398 -0.9289 21 1 -0.3633 -1.0242 0.0836 22 1 -0.3634 0.5846 0.8452 23 1 3.0654 1.3499 0.2069 24 1 1.4885 1.9552 0.7683 25 1 3.0501 4.8935 -0.8037 26 1 5.1405 -0.6920 0.0318 27 1 0.5959 -2.2980 0.4750 28 1 2.2901 -2.8619 0.6227 29 1 2.1869 -2.8852 3.0323 30 1 0.5420 -3.4481 2.5940 31 1 0.7957 -1.3081 4.2122 32 1 -0.4077 -1.2537 2.8860 33 1 2.2699 0.1178 3.0993 34 1 0.7895 0.6506 2.2529 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308696380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:58:46 Heat of formation + Delta-G solvation = -87.251968 kcal Electronic energy + Delta-G solvation = -16902.536971 eV Core-core repulsion = 14221.351140 eV Total energy + Delta-G solvation = -2681.185830 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49160 -37.97375 -35.62857 -34.57264 -32.35547 -28.82868 -28.32634 -27.31341 -24.45430 -22.66352 -21.54685 -20.49778 -18.63179 -17.37471 -16.76862 -16.19503 -15.52138 -14.79175 -14.70431 -14.38725 -13.72674 -13.35116 -12.82845 -12.72752 -11.97141 -11.81592 -11.44735 -11.26945 -11.19907 -10.97595 -10.93882 -10.86771 -10.80647 -10.56711 -10.38231 -10.27667 -9.94912 -9.72243 -9.25972 -8.43037 -7.34216 -6.02362 -4.03541 2.70247 3.31920 3.38221 3.42810 3.58831 4.37986 4.57343 4.80554 4.93900 5.23772 5.33213 5.53711 5.63782 5.73269 5.75067 5.83173 5.97325 6.01012 6.08779 6.17616 6.22000 6.33835 6.50958 6.52816 6.71819 7.01375 7.16009 7.25225 7.75133 7.98722 8.10525 8.41520 8.54686 9.03208 9.59960 11.08466 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.008584 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.657547 B = 3261.108999 C = 3530.768037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.517 5.517 3 C 0.190 3.810 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.116 3.884 13 C 0.506 3.494 14 O -0.532 6.532 15 O -0.488 6.488 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.152 4.152 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.021 0.979 23 H 0.029 0.971 24 H -0.005 1.005 25 H 0.261 0.739 26 H 0.398 0.602 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -10.964 4.272 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.242 5.242 3 C 0.066 3.934 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.024 3.976 13 C 0.349 3.651 14 O -0.421 6.421 15 O -0.296 6.296 16 C -0.147 4.147 17 C -0.164 4.164 18 C -0.154 4.154 19 C -0.191 4.191 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.013 0.987 25 H 0.071 0.929 26 H 0.254 0.746 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.993 -11.004 4.106 12.121 hybrid contribution 0.393 1.137 -0.080 1.206 sum -2.600 -9.867 4.026 10.970 Atomic orbital electron populations 1.22360 0.88108 0.99606 1.01498 1.62448 1.07352 1.18141 1.36257 1.19850 0.95024 0.81182 0.97362 1.21079 1.37990 0.97200 0.97658 0.91710 1.24998 0.95377 0.97215 0.97146 1.69964 1.40390 1.10742 1.32805 0.86480 0.77697 0.79024 0.84112 1.20787 1.21313 1.19722 1.21546 0.86843 0.96755 0.92426 1.23111 0.91256 0.69985 0.80710 1.90632 1.70468 1.47364 1.33653 1.84757 1.25243 1.84408 1.35163 1.22503 1.02449 0.92683 0.97025 1.22555 1.00877 0.97497 0.95511 1.22272 0.99187 0.94350 0.99595 1.22870 1.01113 0.99051 0.96056 0.90562 0.92785 0.96089 0.95275 0.98728 0.92937 0.74582 0.89027 0.91245 0.91445 0.91292 0.91670 0.91619 0.90062 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.66 60.06 0.52 1.11 16 2 N -0.52 -10.97 4.38 -228.63 -1.00 -11.97 16 3 C 0.19 4.95 3.95 -4.97 -0.02 4.93 16 4 C -0.50 -14.01 8.65 -34.44 -0.30 -14.31 16 5 H 0.06 1.79 7.47 -52.49 -0.39 1.40 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.12 2.15 0.58 -131.63 -0.08 2.07 16 13 C 0.51 10.07 5.48 36.01 0.20 10.27 16 14 O -0.53 -11.20 16.25 -18.75 -0.30 -11.51 16 15 O -0.49 -9.15 12.38 -39.25 -0.49 -9.64 16 16 C -0.11 -1.61 5.83 -25.04 -0.15 -1.75 16 17 C -0.13 -1.60 6.91 -24.70 -0.17 -1.77 16 18 C -0.12 -1.56 6.83 -25.07 -0.17 -1.74 16 19 C -0.15 -2.65 5.09 -25.61 -0.13 -2.78 16 20 H 0.08 1.48 7.38 -51.92 -0.38 1.09 16 21 H 0.05 0.82 5.72 -51.93 -0.30 0.52 16 22 H 0.02 0.38 6.34 -51.93 -0.33 0.05 16 23 H 0.03 0.83 5.97 -51.93 -0.31 0.52 16 24 H -0.01 -0.14 7.08 -51.93 -0.37 -0.51 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.40 5.49 9.10 45.56 0.41 5.91 16 27 H 0.09 1.27 5.67 -51.93 -0.29 0.98 16 28 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.55 6.66 -51.93 -0.35 1.20 16 34 H 0.08 1.50 5.20 -51.93 -0.27 1.23 16 LS Contribution 269.91 15.07 4.07 4.07 Total: -1.00 -32.17 269.91 -6.21 -38.37 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.81 Total: 2.72 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.39 Total: -2.54 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.27 Total: -38.11 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.79 Total: -21.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.17 -6.21 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308696380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.878 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds